| Back to Build/check report for BioC 3.21 experimental data |
|
This page was generated on 2025-10-16 15:01 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 245/432 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| minfiData 0.54.0 (landing page) Kasper Daniel Hansen
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
|
To the developers/maintainers of the minfiData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: minfiData |
| Version: 0.54.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:minfiData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings minfiData_0.54.0.tar.gz |
| StartedAt: 2025-10-16 12:35:43 -0400 (Thu, 16 Oct 2025) |
| EndedAt: 2025-10-16 12:38:45 -0400 (Thu, 16 Oct 2025) |
| EllapsedTime: 181.8 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: minfiData.Rcheck |
| Warnings: 1 |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:minfiData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings minfiData_0.54.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/minfiData.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘minfiData/DESCRIPTION’ ... OK
* this is package ‘minfiData’ version ‘0.54.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘minfiData’ can be installed ... OK
* checking installed package size ... INFO
installed size is 134.3Mb
sub-directories of 1Mb or more:
data 41.4Mb
extdata 92.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
LazyData DB of 41.4 MB without LazyDataCompression set
See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
‘/home/biocbuild/bbs-3.21-data-experiment/meat/minfiData.Rcheck/00check.log’
for details.
minfiData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL minfiData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘minfiData’ ... ** this is package ‘minfiData’ version ‘0.54.0’ ** using staged installation ** data *** moving datasets to lazyload DB ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (minfiData)
minfiData.Rcheck/minfiData-Ex.timings
| name | user | system | elapsed | |
| MsetEx | 2.416 | 0.121 | 2.537 | |
| RGsetEx | 1.762 | 0.163 | 1.924 | |