| Back to Build/check report for BioC 3.21 experimental data |
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This page was generated on 2025-10-16 15:01 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 142/432 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| gageData 2.46.0 (landing page) Weijun Luo
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
|
To the developers/maintainers of the gageData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gageData |
| Version: 2.46.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:gageData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings gageData_2.46.0.tar.gz |
| StartedAt: 2025-10-16 12:19:50 -0400 (Thu, 16 Oct 2025) |
| EndedAt: 2025-10-16 12:20:40 -0400 (Thu, 16 Oct 2025) |
| EllapsedTime: 49.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: gageData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:gageData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings gageData_2.46.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/gageData.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘gageData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gageData’ version ‘2.46.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gageData’ can be installed ... OK
* checking installed package size ... INFO
installed size is 10.9Mb
sub-directories of 1Mb or more:
data 10.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
hnrnp.cnts 9.339 0.19 9.529
* checking PDF version of manual ... OK
* DONE
Status: OK
gageData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL gageData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘gageData’ ... ** this is package ‘gageData’ version ‘2.46.0’ ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gageData)
gageData.Rcheck/gageData-Ex.timings
| name | user | system | elapsed | |
| bmp6 | 3.445 | 0.201 | 3.649 | |
| genesets | 3.057 | 0.067 | 3.126 | |
| gse16873.full | 1.662 | 0.315 | 1.979 | |
| hnrnp.cnts | 9.339 | 0.190 | 9.529 | |
| sc.gene | 0.023 | 0.004 | 0.028 | |