| Back to Build/check report for BioC 3.21 experimental data |
|
This page was generated on 2025-10-16 15:01 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 120/432 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| ewceData 1.16.0 (landing page) Alan Murphy
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
|
To the developers/maintainers of the ewceData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ewceData |
| Version: 1.16.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings ewceData_1.16.0.tar.gz |
| StartedAt: 2025-10-16 12:15:55 -0400 (Thu, 16 Oct 2025) |
| EndedAt: 2025-10-16 12:18:28 -0400 (Thu, 16 Oct 2025) |
| EllapsedTime: 153.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ewceData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings ewceData_1.16.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/ewceData.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘ewceData/DESCRIPTION’ ... OK
* this is package ‘ewceData’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ewceData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
ewceData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL ewceData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘ewceData’ ... ** this is package ‘ewceData’ version ‘1.16.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ewceData)
ewceData.Rcheck/ewceData-Ex.timings
| name | user | system | elapsed | |
| all_hgnc | 1.739 | 0.167 | 2.168 | |
| all_hgnc_wtEnsembl | 0.864 | 0.151 | 1.160 | |
| all_mgi | 0.757 | 0.086 | 0.896 | |
| all_mgi_wtEnsembl | 0.807 | 0.086 | 1.059 | |
| alzh_gwas_top100 | 0.000 | 0.001 | 0.000 | |
| cortex_mrna | 2.460 | 0.400 | 2.931 | |
| ctd | 3.553 | 0.182 | 4.178 | |
| ensembl_transcript_lengths_GCcontent | 1.086 | 0.099 | 1.239 | |
| ewceData-Package | 0.699 | 0.049 | 0.802 | |
| example_genelist | 1.043 | 0.110 | 1.210 | |
| hpsd_genes | 0.708 | 0.056 | 0.822 | |
| hypothalamus_mrna | 0.968 | 0.094 | 1.118 | |
| id_genes | 0.700 | 0.073 | 0.825 | |
| mgi_synonym_data | 1.129 | 0.081 | 1.266 | |
| mouse_to_human_homologs | 0.781 | 0.038 | 0.882 | |
| rbfox_genes | 0.764 | 0.059 | 0.877 | |
| schiz_genes | 0.745 | 0.048 | 0.848 | |
| tt_alzh | 1.097 | 0.664 | 1.816 | |
| tt_alzh_BA36 | 0.803 | 0.098 | 0.953 | |
| tt_alzh_BA44 | 0.792 | 0.049 | 0.895 | |