| Back to Build/check report for BioC 3.21 experimental data |
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This page was generated on 2025-09-30 15:01 -0400 (Tue, 30 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4831 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 369/432 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| SingleCellMultiModal 1.20.0 (landing page) Marcel Ramos
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||
|
To the developers/maintainers of the SingleCellMultiModal package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SingleCellMultiModal |
| Version: 1.20.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SingleCellMultiModal |
| StartedAt: 2025-09-30 11:39:46 -0400 (Tue, 30 Sep 2025) |
| EndedAt: 2025-09-30 11:44:56 -0400 (Tue, 30 Sep 2025) |
| EllapsedTime: 309.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SingleCellMultiModal
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* checking for file ‘SingleCellMultiModal/DESCRIPTION’ ... OK
* preparing ‘SingleCellMultiModal’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CITEseq.Rmd’ using rmarkdown
--- finished re-building ‘CITEseq.Rmd’
--- re-building ‘ECCITEseq.Rmd’ using rmarkdown
--- finished re-building ‘ECCITEseq.Rmd’
--- re-building ‘GTseq.Rmd’ using rmarkdown
--- finished re-building ‘GTseq.Rmd’
--- re-building ‘SCoPE2.Rmd’ using rmarkdown
--- finished re-building ‘SCoPE2.Rmd’
--- re-building ‘SingleCellMultiModal.Rmd’ using rmarkdown
--- finished re-building ‘SingleCellMultiModal.Rmd’
--- re-building ‘scMultiome.Rmd’ using rmarkdown
Quitting from scMultiome.Rmd:48-50 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `readRDS()`:
! error reading from connection
---
Backtrace:
▆
1. └─SingleCellMultiModal::scMultiome(...)
2. └─SingleCellMultiModal:::.getResourcesList(...)
3. └─SingleCellMultiModal:::.getResources(...)
4. └─SingleCellMultiModal:::.loadMTX(ExperimentHub, rpath, verbose)
5. └─base::lapply(...)
6. └─SingleCellMultiModal (local) FUN(X[[i]], ...)
7. ├─AnnotationHub::query(ehub, mtxdata)
8. └─AnnotationHub::query(ehub, mtxdata)
9. └─AnnotationHub (local) .local(x, pattern, ...)
10. └─AnnotationHub:::.db_index_load(x)
11. └─base::readRDS(.db_index_file(x))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'scMultiome.Rmd' failed with diagnostics:
error reading from connection
--- failed re-building ‘scMultiome.Rmd’
--- re-building ‘scNMT.Rmd’ using rmarkdown
--- finished re-building ‘scNMT.Rmd’
--- re-building ‘seqFISH.Rmd’ using rmarkdown
--- finished re-building ‘seqFISH.Rmd’
SUMMARY: processing the following file failed:
‘scMultiome.Rmd’
Error: Vignette re-building failed.
Execution halted