| Back to Build/check report for BioC 3.21 experimental data |
|
This page was generated on 2025-10-16 15:01 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 104/432 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| DrugVsDiseasedata 1.44.0 (landing page) J. Saez-Rodriguez
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
|
To the developers/maintainers of the DrugVsDiseasedata package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DrugVsDiseasedata |
| Version: 1.44.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:DrugVsDiseasedata.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings DrugVsDiseasedata_1.44.0.tar.gz |
| StartedAt: 2025-10-16 12:13:02 -0400 (Thu, 16 Oct 2025) |
| EndedAt: 2025-10-16 12:13:18 -0400 (Thu, 16 Oct 2025) |
| EllapsedTime: 16.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DrugVsDiseasedata.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:DrugVsDiseasedata.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings DrugVsDiseasedata_1.44.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/DrugVsDiseasedata.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘DrugVsDiseasedata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DrugVsDiseasedata’ version ‘1.44.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DrugVsDiseasedata’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
prepare_Rd: DrugVsDiseasedata-package.Rd:33-35: Dropping empty section \seealso
checkRd: (-1) DrugVsDiseasedata-package.Rd:25: Lost braces
25 | Maintainer: Julio Saez-Rodriguez{saezrodriguez@ebi.ac.uk}
| ^
prepare_Rd: GEOfactorvalues.Rd:18-20: Dropping empty section \references
prepare_Rd: annotationlist.Rd:17-18: Dropping empty section \source
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.21-data-experiment/meat/DrugVsDiseasedata.Rcheck/00check.log’
for details.
DrugVsDiseasedata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL DrugVsDiseasedata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘DrugVsDiseasedata’ ... ** this is package ‘DrugVsDiseasedata’ version ‘1.44.0’ ** using staged installation ** data *** moving datasets to lazyload DB ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DrugVsDiseasedata)
DrugVsDiseasedata.Rcheck/DrugVsDiseasedata-Ex.timings
| name | user | system | elapsed | |
| DrugVsDiseasedata-package | 0.012 | 0.001 | 0.014 | |
| GEOfactorvalues | 0.001 | 0.000 | 0.001 | |
| annotationlist | 0.000 | 0.000 | 0.001 | |
| cytodisease | 0.000 | 0.000 | 0.001 | |
| diseaseClusters | 0.001 | 0.001 | 0.001 | |
| diseaseRL | 0.001 | 0.000 | 0.000 | |
| diseaselabels | 0 | 0 | 0 | |
| genelist | 0.000 | 0.001 | 0.000 | |