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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL rgoslin
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘rgoslin’ ...
** this is package ‘rgoslin’ version ‘1.12.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
The name of the shared library to be created is: rgoslin.so
rm -f "cppgoslin/parser/KnownGrammars.h"
rm -f "src/domain/LipidClasses.cpp"
rm -f "cppgoslin/domain/ClassesEnum.h"
rm -f cppgoslin/domain/*.o
rm -f cppgoslin/parser/*.o
rm -f cppgoslin/tests/*.o
rm -f libcppGoslin.so
rm -f *Test
rm -f writeGrammarsHeader
rm -f writeLipidEnums
rm -f libcppGoslin.a
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I . -o writeGrammarsHeader writeGrammarsHeader.cpp && "./writeGrammarsHeader" "cppgoslin/parser/KnownGrammars.h"
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I . -o writeLipidEnums writeLipidEnums.cpp src/domain/StringFunctions.cpp src/parser/SumFormulaParserEventHandler.cpp src/parser/ParserClasses.cpp && "./writeLipidEnums" "src/domain/LipidClasses.cpp"
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/Adduct.o -c src/domain/Adduct.cpp
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidMolecularSpecies.o -c src/domain/LipidMolecularSpecies.cpp
In file included from src/domain/LipidMolecularSpecies.cpp:26:
In file included from ./cppgoslin/domain/LipidMolecularSpecies.h:32:
In file included from ./cppgoslin/domain/LipidSpecies.h:36:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidSnPosition.o -c src/domain/LipidSnPosition.cpp
In file included from src/domain/LipidSnPosition.cpp:26:
In file included from ./cppgoslin/domain/LipidSnPosition.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidStructureDefined.o -c src/domain/LipidStructureDefined.cpp
In file included from src/domain/LipidStructureDefined.cpp:26:
In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/FattyAcid.o -c src/domain/FattyAcid.cpp
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidAdduct.o -c src/domain/LipidAdduct.cpp
In file included from src/domain/LipidAdduct.cpp:26:
In file included from ./cppgoslin/domain/LipidAdduct.h:35:
In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:
In file included from ./cppgoslin/domain/LipidFullStructure.h:31:
In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidSpecies.o -c src/domain/LipidSpecies.cpp
In file included from src/domain/LipidSpecies.cpp:26:
In file included from ./cppgoslin/domain/LipidSpecies.h:36:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidFullStructure.o -c src/domain/LipidFullStructure.cpp
In file included from src/domain/LipidFullStructure.cpp:26:
In file included from ./cppgoslin/domain/LipidFullStructure.h:31:
In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidCompleteStructure.o -c src/domain/LipidCompleteStructure.cpp
In file included from src/domain/LipidCompleteStructure.cpp:26:
In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:
In file included from ./cppgoslin/domain/LipidFullStructure.h:31:
In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidSpeciesInfo.o -c src/domain/LipidSpeciesInfo.cpp
In file included from src/domain/LipidSpeciesInfo.cpp:26:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/StringFunctions.o -c src/domain/StringFunctions.cpp
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidClasses.o -c src/domain/LipidClasses.cpp
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/DoubleBonds.o -c src/domain/DoubleBonds.cpp
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/FunctionalGroup.o -c src/domain/FunctionalGroup.cpp
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/Headgroup.o -c src/domain/Headgroup.cpp
In file included from src/domain/Headgroup.cpp:26:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/Cycle.o -c src/domain/Cycle.cpp
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/GenericDatastructures.o -c src/domain/GenericDatastructures.cpp
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/ParserClasses.o -c src/parser/ParserClasses.cpp
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/KnownParsers.o -c src/parser/KnownParsers.cpp
In file included from src/parser/KnownParsers.cpp:26:
In file included from ./cppgoslin/parser/KnownParsers.h:30:
In file included from ./cppgoslin/parser/FattyAcidParserEventHandler.h:31:
In file included from ./cppgoslin/domain/LipidAdduct.h:35:
In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:
In file included from ./cppgoslin/domain/LipidFullStructure.h:31:
In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/GoslinParserEventHandler.o -c src/parser/GoslinParserEventHandler.cpp
In file included from src/parser/GoslinParserEventHandler.cpp:26:
In file included from ./cppgoslin/parser/GoslinParserEventHandler.h:31:
In file included from ./cppgoslin/domain/LipidAdduct.h:35:
In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:
In file included from ./cppgoslin/domain/LipidFullStructure.h:31:
In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/LipidMapsParserEventHandler.o -c src/parser/LipidMapsParserEventHandler.cpp
In file included from src/parser/LipidMapsParserEventHandler.cpp:26:
In file included from ./cppgoslin/parser/LipidMapsParserEventHandler.h:31:
In file included from ./cppgoslin/domain/LipidAdduct.h:35:
In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:
In file included from ./cppgoslin/domain/LipidFullStructure.h:31:
In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/SwissLipidsParserEventHandler.o -c src/parser/SwissLipidsParserEventHandler.cpp
In file included from src/parser/SwissLipidsParserEventHandler.cpp:26:
In file included from ./cppgoslin/parser/SwissLipidsParserEventHandler.h:32:
In file included from ./cppgoslin/domain/LipidAdduct.h:35:
In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:
In file included from ./cppgoslin/domain/LipidFullStructure.h:31:
In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/HmdbParserEventHandler.o -c src/parser/HmdbParserEventHandler.cpp
In file included from src/parser/HmdbParserEventHandler.cpp:26:
In file included from ./cppgoslin/parser/HmdbParserEventHandler.h:31:
In file included from ./cppgoslin/domain/LipidAdduct.h:35:
In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:
In file included from ./cppgoslin/domain/LipidFullStructure.h:31:
In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/SumFormulaParserEventHandler.o -c src/parser/SumFormulaParserEventHandler.cpp
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/SumFormulaParser.o -c src/parser/SumFormulaParser.cpp
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/ShorthandParserEventHandler.o -c src/parser/ShorthandParserEventHandler.cpp
In file included from src/parser/ShorthandParserEventHandler.cpp:26:
In file included from ./cppgoslin/parser/ShorthandParserEventHandler.h:32:
In file included from ./cppgoslin/domain/LipidAdduct.h:35:
In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:
In file included from ./cppgoslin/domain/LipidFullStructure.h:31:
In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/FattyAcidParserEventHandler.o -c src/parser/FattyAcidParserEventHandler.cpp
In file included from src/parser/FattyAcidParserEventHandler.cpp:26:
In file included from ./cppgoslin/parser/FattyAcidParserEventHandler.h:31:
In file included from ./cppgoslin/domain/LipidAdduct.h:35:
In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:
In file included from ./cppgoslin/domain/LipidFullStructure.h:31:
In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/LipidBaseParserEventHandler.o -c src/parser/LipidBaseParserEventHandler.cpp
In file included from src/parser/LipidBaseParserEventHandler.cpp:26:
In file included from ./cppgoslin/parser/LipidBaseParserEventHandler.h:31:
In file included from ./cppgoslin/domain/LipidAdduct.h:35:
In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:
In file included from ./cppgoslin/domain/LipidFullStructure.h:31:
In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:
In file included from ./cppgoslin/domain/Headgroup.h:31:
./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
ar rcs libcppGoslin.a src/domain/Adduct.o src/domain/LipidMolecularSpecies.o src/domain/LipidSnPosition.o src/domain/LipidStructureDefined.o src/domain/FattyAcid.o src/domain/LipidAdduct.o src/domain/LipidSpecies.o src/domain/LipidFullStructure.o src/domain/LipidCompleteStructure.o src/domain/LipidSpeciesInfo.o src/domain/StringFunctions.o src/domain/LipidClasses.o src/domain/DoubleBonds.o src/domain/FunctionalGroup.o src/domain/Headgroup.o src/domain/Cycle.o src/domain/GenericDatastructures.o src/parser/ParserClasses.o src/parser/KnownParsers.o src/parser/GoslinParserEventHandler.o src/parser/LipidMapsParserEventHandler.o src/parser/SwissLipidsParserEventHandler.o src/parser/HmdbParserEventHandler.o src/parser/SumFormulaParserEventHandler.o src/parser/SumFormulaParser.o src/parser/ShorthandParserEventHandler.o src/parser/FattyAcidParserEventHandler.o src/parser/LipidBaseParserEventHandler.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"." -I"./cppgoslin" -I"./cppgoslin/cppgoslin" -I"./cppgoslin/cppgoslin/domain" -I"./cppgoslin/cppgoslin/parser" -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"." -I"./cppgoslin" -I"./cppgoslin/cppgoslin" -I"./cppgoslin/cppgoslin/domain" -I"./cppgoslin/cppgoslin/parser" -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rgoslin.cpp -o rgoslin.o
In file included from rgoslin.cpp:3:
In file included from ./cppgoslin/cppgoslin/cppgoslin.h:37:
In file included from ./cppgoslin/cppgoslin/domain/Headgroup.h:31:
./cppgoslin/cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]
    string to_string();
           ^
./cppgoslin/cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)
    string to_string(LipidLevel level);
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o rgoslin.so RcppExports.o rgoslin.o cppgoslin/libcppGoslin.a -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-rgoslin/00new/rgoslin/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rgoslin)