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This page was generated on 2024-10-24 11:04 -0400 (Thu, 24 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 3656
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Package 110/2281HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ATACCoGAPS 1.7.1  (landing page)
Rossin Erbe
Snapshot Date: 2024-10-23 19:16 -0400 (Wed, 23 Oct 2024)
git_url: https://git.bioconductor.org/packages/ATACCoGAPS
git_branch: devel
git_last_commit: 8a0e634
git_last_commit_date: 2024-10-15 09:45:29 -0400 (Tue, 15 Oct 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for ATACCoGAPS on nebbiolo1

To the developers/maintainers of the ATACCoGAPS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ATACCoGAPS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ATACCoGAPS
Version: 1.7.1
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ATACCoGAPS
StartedAt: 2024-10-24 03:35:45 -0400 (Thu, 24 Oct 2024)
EndedAt: 2024-10-24 03:35:46 -0400 (Thu, 24 Oct 2024)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ATACCoGAPS
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* checking for file ‘ATACCoGAPS/DESCRIPTION’ ... OK
* preparing ‘ATACCoGAPS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
ERROR: dependencies ‘TFBSTools’, ‘motifmatchr’, ‘chromVAR’, ‘rGREAT’, ‘JASPAR2016’, ‘Homo.sapiens’, ‘Mus.musculus’, ‘BSgenome.Hsapiens.UCSC.hg19’, ‘BSgenome.Mmusculus.UCSC.mm10’ are not available for package ‘ATACCoGAPS’
Perhaps try a variation of:
install.packages(c('TFBSTools', 'motifmatchr', 'chromVAR', 'rGREAT', 'JASPAR2016', 'Homo.sapiens', 'Mus.musculus', 'BSgenome.Hsapiens.UCSC.hg19', 'BSgenome.Mmusculus.UCSC.mm10'))
* removing ‘/tmp/RtmpkiKXti/Rinstc570d8a7b9bd/ATACCoGAPS’
      -----------------------------------
ERROR: package installation failed