Back to Multiple platform build/check report for BioC 3.19:   simplified   long
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

This page was generated on 2024-10-18 20:38 -0400 (Fri, 18 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4500
merida1macOS 12.7.5 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4530
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1819/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rqubic 1.50.0  (landing page)
Jitao David Zhang
Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024)
git_url: https://git.bioconductor.org/packages/rqubic
git_branch: RELEASE_3_19
git_last_commit: ebbffd7
git_last_commit_date: 2024-04-30 10:25:13 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

INSTALL results for rqubic on nebbiolo1

To the developers/maintainers of the rqubic package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rqubic.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: rqubic
Version: 1.50.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL rqubic
StartedAt: 2024-10-16 16:36:46 -0400 (Wed, 16 Oct 2024)
EndedAt: 2024-10-16 16:36:54 -0400 (Wed, 16 Oct 2024)
EllapsedTime: 8.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL rqubic
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘rqubic’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
gcc -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c bicluster.c -o bicluster.o
bicluster.c: In function ‘seed_intersect_r’:
bicluster.c:354:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  354 |       if (flag=ss) (*m_cnt)++;
      |           ^~~~
gcc -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c discretize.c -o discretize.o
In file included from discretize.c:9:
rqubic.h:62:20: warning: ‘MINCOL_ATT_NAME’ defined but not used [-Wunused-variable]
   62 | static const char *MINCOL_ATT_NAME="minimumCol";
      |                    ^~~~~~~~~~~~~~~
rqubic.h:61:20: warning: ‘EDGELIST_ATT_NAME’ defined but not used [-Wunused-variable]
   61 | static const char *EDGELIST_ATT_NAME="edgelist";
      |                    ^~~~~~~~~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c fib.c -o fib.o
In file included from fib.c:35:
rqubic.h:62:20: warning: ‘MINCOL_ATT_NAME’ defined but not used [-Wunused-variable]
   62 | static const char *MINCOL_ATT_NAME="minimumCol";
      |                    ^~~~~~~~~~~~~~~
rqubic.h:61:20: warning: ‘EDGELIST_ATT_NAME’ defined but not used [-Wunused-variable]
   61 | static const char *EDGELIST_ATT_NAME="edgelist";
      |                    ^~~~~~~~~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c graph.c -o graph.o
gcc -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c rqubic.c -o rqubic.o
In file included from rqubic.c:5:
rqubic.h:62:20: warning: ‘MINCOL_ATT_NAME’ defined but not used [-Wunused-variable]
   62 | static const char *MINCOL_ATT_NAME="minimumCol";
      |                    ^~~~~~~~~~~~~~~
rqubic.h:61:20: warning: ‘EDGELIST_ATT_NAME’ defined but not used [-Wunused-variable]
   61 | static const char *EDGELIST_ATT_NAME="edgelist";
      |                    ^~~~~~~~~~~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o rqubic.so bicluster.o discretize.o fib.o graph.o rqubic.o -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-rqubic/00new/rqubic/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rqubic)