| Back to Multiple platform build/check report for BioC 3.19: simplified long | 
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This page was generated on 2024-06-11 14:42 -0400 (Tue, 11 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4757 | 
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4491 | 
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4522 | 
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4468 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1308/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mobileRNA 1.0.11  (landing page) Katie Jeynes-Cupper 
 | nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK |  | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK |  | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK |  | ||||||||
| To the developers/maintainers of the mobileRNA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: mobileRNA | 
| Version: 1.0.11 | 
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.0.11.tar.gz | 
| StartedAt: 2024-06-09 21:37:11 -0400 (Sun, 09 Jun 2024) | 
| EndedAt: 2024-06-09 21:42:26 -0400 (Sun, 09 Jun 2024) | 
| EllapsedTime: 314.5 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: mobileRNA.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.0.11.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/mobileRNA.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mobileRNA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mobileRNA’ version ‘1.0.11’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mobileRNA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
RNAdistribution         11.992  0.064  12.070
RNAdicercall            11.394  0.112  11.518
RNAsubset               11.230  0.028  11.274
RNAdifferentialAnalysis  7.265  0.188   7.461
RNAsummary               5.485  0.058   5.554
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
mobileRNA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mobileRNA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘mobileRNA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mobileRNA)
mobileRNA.Rcheck/mobileRNA-Ex.timings
| name | user | system | elapsed | |
| RNAattributes | 0.533 | 0.028 | 0.572 | |
| RNAdf2se | 0.247 | 0.003 | 0.250 | |
| RNAdicercall | 11.394 | 0.112 | 11.518 | |
| RNAdifferentialAnalysis | 7.265 | 0.188 | 7.461 | |
| RNAdistribution | 11.992 | 0.064 | 12.070 | |
| RNAfeatures | 0.695 | 0.005 | 0.701 | |
| RNAimport | 0.000 | 0.000 | 0.001 | |
| RNAmergeAnnotations | 0.320 | 0.006 | 0.328 | |
| RNAmergeGenomes | 0.059 | 0.002 | 0.063 | |
| RNAmobile | 0.812 | 0.045 | 0.859 | |
| RNApopulation | 2.501 | 0.029 | 2.534 | |
| RNAreorder | 0.137 | 0.002 | 0.139 | |
| RNAsequences | 1.385 | 0.015 | 1.401 | |
| RNAsubset | 11.230 | 0.028 | 11.274 | |
| RNAsummary | 5.485 | 0.058 | 5.554 | |
| mRNA_data | 0.083 | 0.002 | 0.085 | |
| mapRNA | 0.001 | 0.001 | 0.001 | |
| plotHeatmap | 0.786 | 0.009 | 0.797 | |
| plotRNAfeatures | 0.622 | 0.004 | 0.627 | |
| plotSampleDistance | 2.698 | 0.046 | 2.748 | |
| plotSamplePCA | 3.289 | 0.035 | 3.331 | |
| sRNA_data | 0.141 | 0.001 | 0.143 | |