Multiple platform build/check report for BioC 3.19 - BUILD BIN results for mbkmeans on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4763
palomino7	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4500
merida1	macOS 12.7.5 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4530
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4480
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD BIN results for mbkmeans on palomino7

To the developers/maintainers of the mbkmeans package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mbkmeans.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: mbkmeans

Version: 1.20.0

Command: rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=mbkmeans.buildbin-libdir mbkmeans_1.20.0.tar.gz

StartedAt: 2024-10-17 08:05:16 -0400 (Thu, 17 Oct 2024)

EndedAt: 2024-10-17 08:06:10 -0400 (Thu, 17 Oct 2024)

EllapsedTime: 54.1 seconds

RetCode: 0

Status: OK

PackageFile: mbkmeans_1.20.0.zip

PackageFileSize: 707.4 KiB

Command output

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### Running command:
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###   rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=mbkmeans.buildbin-libdir mbkmeans_1.20.0.tar.gz
###
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* installing *source* package 'mbkmeans' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
using C++11
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/RcppArmadillo/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/beachmat/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/ClusterR/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/RcppArmadillo/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/beachmat/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/ClusterR/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:
E:/biocbuild/bbs-3.19-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
E:/biocbuild/bbs-3.19-bioc/R/library/ClusterR/include/ClusterRHeader.h:862:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
  862 |         bool status;
      |              ^~~~~~
E:/biocbuild/bbs-3.19-bioc/R/library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_full<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]':
E:/biocbuild/bbs-3.19-bioc/R/library/ClusterR/include/ClusterRHeader.h:1592:65:   required from here
E:/biocbuild/bbs-3.19-bioc/R/library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
 1530 |         bool status;
      |              ^~~~~~
E:/biocbuild/bbs-3.19-bioc/R/library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_diag<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]':
E:/biocbuild/bbs-3.19-bioc/R/library/ClusterR/include/ClusterRHeader.h:1626:65:   required from here
E:/biocbuild/bbs-3.19-bioc/R/library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.19-bioc/meat/mbkmeans.buildbin-libdir/00LOCK-mbkmeans/00new/mbkmeans/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'mbkmeans' as mbkmeans_1.20.0.zip
* DONE (mbkmeans)