| Back to Multiple platform build/check report for BioC 3.19: simplified long | 
  | 
This page was generated on 2024-10-18 20:40 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 | 
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 | 
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 | 
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 897/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| goSorensen 1.6.0  (landing page) Pablo Flores 
  | nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| 
To the developers/maintainers of the goSorensen package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/goSorensen.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.  | 
| Package: goSorensen | 
| Version: 1.6.0 | 
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:goSorensen.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings goSorensen_1.6.0.tar.gz | 
| StartedAt: 2024-10-17 06:15:26 -0400 (Thu, 17 Oct 2024) | 
| EndedAt: 2024-10-17 06:55:26 -0400 (Thu, 17 Oct 2024) | 
| EllapsedTime: 2400.2 seconds | 
| RetCode: None | 
| Status: TIMEOUT | 
| CheckDir: goSorensen.Rcheck | 
| Warnings: NA | 
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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:goSorensen.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings goSorensen_1.6.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/goSorensen.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘goSorensen/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘goSorensen’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘goSorensen’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ...
goSorensen.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL goSorensen ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘goSorensen’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (goSorensen)
goSorensen.Rcheck/goSorensen-Ex.timings
| name | user | system | elapsed | |
| allBuildEnrichTable | 0.001 | 0.001 | 0.001 | |
| allEquivTestSorensen | 0.156 | 0.029 | 0.195 | |
| allHclustThreshold | 0.208 | 0.018 | 0.241 | |
| allSorenThreshold | 0.169 | 0.006 | 0.189 | |
| buildEnrichTable | 32.672 | 3.028 | 40.294 | |
| dSorensen | 0.165 | 0.065 | 0.255 | |
| duppSorensen | 0.278 | 0.065 | 0.380 | |
| equivTestSorensen | 0.378 | 0.014 | 0.432 | |
| getDissimilarity | 0.437 | 0.185 | 0.673 | |
| getEffNboot | 3.345 | 0.094 | 3.775 | |
| getNboot | 3.268 | 0.080 | 3.648 | |
| getPvalue | 0.432 | 0.180 | 0.671 | |
| getSE | 0.448 | 0.187 | 0.689 | |
| getTable | 0.591 | 0.292 | 0.936 | |
| getUpper | 0.439 | 0.186 | 0.691 | |