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### Running command:
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###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL garfield
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* installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’
* installing *source* package ‘garfield’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 10.3.1’
using C++ compiler: ‘g++ (GCC) 10.3.1’
gcc -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -c garfield_init.c -o garfield_init.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall  -c garfield_perm.cpp -o garfield_perm.o
garfield_perm.cpp: In function ‘void batchfeep(std::vector<std::vector<double> >&, std::vector<std::vector<double> >&, const std::vector<bin>&, const std::vector<double>&, int, int, bool, int, double, int, std::vector<bool>)’:
garfield_perm.cpp:306:15: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘long int’ [-Wformat=]
  306 |   Rprintf("\r%s/%s\t\t%s\%\t\t%s annotations/s\t\t Time remaining: %s s",j+1,nannot, 100.0 * (j+1) / nannot, nannot,1.0 * (nannot - (j+1)) / perms_per_sec   );
      |              ~^                                                          ~~~
      |               |                                                           |
      |               char*                                                       long int
      |              %ld
garfield_perm.cpp:306:18: warning: format ‘%s’ expects argument of type ‘char*’, but argument 3 has type ‘int’ [-Wformat=]
  306 |   Rprintf("\r%s/%s\t\t%s\%\t\t%s annotations/s\t\t Time remaining: %s s",j+1,nannot, 100.0 * (j+1) / nannot, nannot,1.0 * (nannot - (j+1)) / perms_per_sec   );
      |                 ~^                                                           ~~~~~~
      |                  |                                                           |
      |                  char*                                                       int
      |                 %d
garfield_perm.cpp:306:24: warning: format ‘%s’ expects argument of type ‘char*’, but argument 4 has type ‘double’ [-Wformat=]
  306 |   Rprintf("\r%s/%s\t\t%s\%\t\t%s annotations/s\t\t Time remaining: %s s",j+1,nannot, 100.0 * (j+1) / nannot, nannot,1.0 * (nannot - (j+1)) / perms_per_sec   );
      |                       ~^                                                             ~~~~~~~~~~~~~~~~~~~~~~
      |                        |                                                                           |
      |                        char*                                                                       double
      |                       %f
garfield_perm.cpp:306:27: warning: unknown conversion type character ‘\x09’ in format [-Wformat=]
  306 |   Rprintf("\r%s/%s\t\t%s\%\t\t%s annotations/s\t\t Time remaining: %s s",j+1,nannot, 100.0 * (j+1) / nannot, nannot,1.0 * (nannot - (j+1)) / perms_per_sec   );
      |                           ^~
garfield_perm.cpp:306:32: warning: format ‘%s’ expects argument of type ‘char*’, but argument 5 has type ‘int’ [-Wformat=]
  306 |   Rprintf("\r%s/%s\t\t%s\%\t\t%s annotations/s\t\t Time remaining: %s s",j+1,nannot, 100.0 * (j+1) / nannot, nannot,1.0 * (nannot - (j+1)) / perms_per_sec   );
      |                               ~^                                                                             ~~~~~~
      |                                |                                                                             |
      |                                char*                                                                         int
      |                               %d
garfield_perm.cpp:306:69: warning: format ‘%s’ expects argument of type ‘char*’, but argument 6 has type ‘double’ [-Wformat=]
  306 |   Rprintf("\r%s/%s\t\t%s\%\t\t%s annotations/s\t\t Time remaining: %s s",j+1,nannot, 100.0 * (j+1) / nannot, nannot,1.0 * (nannot - (j+1)) / perms_per_sec   );
      |                                                                    ~^                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                                                     |                                                                      |
      |                                                                     char*                                                                  double
      |                                                                    %f
garfield_perm.cpp: In function ‘int garfield_perm(char**, char**, char**, char**, char**, char**, char**, char**, char**, char**, char**, char**, char**)’:
garfield_perm.cpp:356:13: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘int’ [-Wformat=]
  356 |   Rprintf("%s",nannot);
      |            ~^  ~~~~~~
      |             |  |
      |             |  int
      |             char*
      |            %d
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall  -c garfield_prep.cpp -o garfield_prep.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -L/usr/local/lib -o garfield.so garfield_init.o garfield_perm.o garfield_prep.o -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -lR
installing to /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-garfield/00new/garfield/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (garfield)