Oliver M. Crook
| Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/bandle |
| git_branch: RELEASE_3_19 |
| git_last_commit: 4ff13d5 |
| git_last_commit_date: 2024-04-30 11:41:48 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-06-11 14:41 -0400 (Tue, 11 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4757 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4491 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4522 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4468 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 124/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bandle 1.8.0 (landing page) Oliver M. Crook
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the bandle package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bandle.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: bandle |
| Version: 1.8.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:bandle.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings bandle_1.8.0.tar.gz |
| StartedAt: 2024-06-09 18:49:54 -0400 (Sun, 09 Jun 2024) |
| EndedAt: 2024-06-09 18:59:48 -0400 (Sun, 09 Jun 2024) |
| EllapsedTime: 594.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: bandle.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:bandle.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings bandle_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/bandle.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘bandle/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘bandle’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bandle’ can be installed ... WARNING
Found the following significant warnings:
/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
# warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
See ‘/Users/biocbuild/bbs-3.19-bioc/meat/bandle.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘Biobase’ which was already attached by Depends.
Please remove these calls from your code.
':::' call which should be '::': ‘dplyr:::summarise’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... NOTE
Auto-generated content requiring editing in Rd file 'bandle-package.Rd':
\details: ‘...o use the package, including the most important functions ~~’
\references: ‘~~ Literature or other references for background information ~~’
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
bandle-differentiallocalisation 26.137 0.695 26.919
bandle-gpfit 16.893 0.291 17.257
bandle 10.035 0.150 10.204
bandle-EFDR 9.175 0.394 9.595
bandle-process 8.500 0.087 8.604
bandle-plots-translocations 8.292 0.096 8.398
bandle-predict 8.073 0.066 8.152
bandle-plots-convergence 6.837 0.103 6.956
bandle-plots-translocations-table 6.669 0.085 6.768
bandle-prior 6.158 0.376 6.554
bandle-plots-prob 5.652 0.107 5.772
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘spelling.R’
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 4 NOTEs
See
‘/Users/biocbuild/bbs-3.19-bioc/meat/bandle.Rcheck/00check.log’
for details.
bandle.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL bandle
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘bandle’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Bessel2ndKind.cpp -o Bessel2ndKind.o
In file included from Bessel2ndKind.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/special_functions/bessel.hpp:19:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/special_functions/math_fwd.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11:
/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
# warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
^
1 warning generated.
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dmvtCpp.cpp -o dmvtCpp.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c leapfrogGPcpp.cpp -o leapfrogGPcpp.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pg_sample.cpp -o pg_sample.o
clang++ -arch x86_64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o bandle.so Bessel2ndKind.o RcppExports.o dmvtCpp.o leapfrogGPcpp.o pg_sample.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-bandle/00new/bandle/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function from function ‘posteriorEstimates’ in package ‘bandle’
Creating a generic function from function ‘bandleJoint’ in package ‘bandle’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bandle)
bandle.Rcheck/tests/spelling.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> #if(requireNamespace('spelling', quietly = TRUE))
> # spelling::spell_check_test(vignettes = TRUE, error = FALSE,
> # skip_on_cran = TRUE)
>
> proc.time()
user system elapsed
0.216 0.077 0.291
bandle.Rcheck/tests/testthat.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # The setting of R_TESTS exists to work around an R bug. See
> # https://github.com/hadley/testthat/issues/144
> # We should remove it when the issue is resolved.
> Sys.setenv("R_TESTS" = "")
>
> library("testthat")
> library("bandle")
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
union, unique, unsplit, which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: MSnbase
Loading required package: mzR
Loading required package: Rcpp
Loading required package: ProtGenerics
Attaching package: 'ProtGenerics'
The following object is masked from 'package:stats':
smooth
This is MSnbase version 2.30.1
Visit https://lgatto.github.io/MSnbase/ to get started.
Consider switching to the 'R for Mass Spectrometry'
packages - see https://RforMassSpectrometry.org for details.
Attaching package: 'MSnbase'
The following object is masked from 'package:base':
trimws
Loading required package: pRoloc
Loading required package: MLInterfaces
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: IRanges
Loading required package: XML
Attaching package: 'annotate'
The following object is masked from 'package:mzR':
nChrom
Loading required package: cluster
Loading required package: BiocParallel
This is pRoloc version 1.44.0
Visit https://lgatto.github.io/pRoloc/ to get started.
Attaching package: 'bandle'
The following object is masked from 'package:pRoloc':
spatial2D
> library("pRolocdata")
This is pRolocdata version 1.42.0.
Use 'pRolocdata()' to list available data sets.
>
> test_check("bandle")
[1] "markers"
[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|==== | 5%
|
|======= | 10%
|
|========== | 15%
|
|============== | 20%
|
|================== | 25%
|
|===================== | 30%
|
|======================== | 35%
|
|============================ | 40%
|
|================================ | 45%
|
|=================================== | 50%
|
|====================================== | 55%
|
|========================================== | 60%
|
|============================================== | 65%
|
|================================================= | 70%
|
|==================================================== | 75%
|
|======================================================== | 80%
|
|============================================================ | 85%
|
|=============================================================== | 90%[1] "markers"
[1] "markers"
|
| | 0%
|
|==== | 5%
|
|======= | 10%
|
|========== | 15%
|
|============== | 20%
|
|================== | 25%
|
|===================== | 30%
|
|======================== | 35%
|
|============================ | 40%
|
|================================ | 45%
|
|=================================== | 50%
|
|====================================== | 55%
|
|========================================== | 60%
|
|============================================== | 65%
|
|================================================= | 70%
|
|==================================================== | 75%
|
|======================================================== | 80%
|
|============================================================ | 85%
|
|=============================================================== | 90%[1] "xx"
[1] "xx"
|
| | 0%
|
|==== | 5%
|
|======= | 10%
|
|========== | 15%
|
|============== | 20%
|
|================== | 25%
|
|===================== | 30%
|
|======================== | 35%
|
|============================ | 40%
|
|================================ | 45%
|
|=================================== | 50%
|
|====================================== | 55%
|
|========================================== | 60%
|
|============================================== | 65%
|
|================================================= | 70%
|
|==================================================== | 75%
|
|======================================================== | 80%
|
|============================================================ | 85%
|
|=============================================================== | 90%[1] "xx"
[1] "xx"
|
| | 0%
|
|==== | 5%
|
|======= | 10%
|
|========== | 15%
|
|============== | 20%
|
|================== | 25%
|
|===================== | 30%
|
|======================== | 35%
|
|============================ | 40%
|
|================================ | 45%
|
|=================================== | 50%
|
|====================================== | 55%
|
|========================================== | 60%
|
|============================================== | 65%
|
|================================================= | 70%
|
|==================================================== | 75%
|
|======================================================== | 80%
|
|============================================================ | 85%
|
|=============================================================== | 90%[1] "markers"
[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
[1] "markers"
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%[1] "markers"
[1] "markers"
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%[1] "markers"
[1] "markers"
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%[1] "markers"
[1] "markers"
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%[1] "markers"
[1] "markers"
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%[1] "markers"
[1] "markers"
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%[1] "markers"
[1] "markers"
[1] "markers"
[1] "markers"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 36 ]
>
> proc.time()
user system elapsed
122.018 4.865 127.309
bandle.Rcheck/bandle-Ex.timings
| name | user | system | elapsed | |
| bandle-EFDR | 9.175 | 0.394 | 9.595 | |
| bandle-cpp | 0 | 0 | 0 | |
| bandle-differentiallocalisation | 26.137 | 0.695 | 26.919 | |
| bandle-gp | 0 | 0 | 0 | |
| bandle-gpfit | 16.893 | 0.291 | 17.257 | |
| bandle-internal | 0.503 | 0.012 | 0.515 | |
| bandle-meanOrganelle | 0.037 | 0.005 | 0.041 | |
| bandle-plots-convergence | 6.837 | 0.103 | 6.956 | |
| bandle-plots-prob | 5.652 | 0.107 | 5.772 | |
| bandle-plots-spatial | 0.001 | 0.001 | 0.001 | |
| bandle-plots-translocations-table | 6.669 | 0.085 | 6.768 | |
| bandle-plots-translocations | 8.292 | 0.096 | 8.398 | |
| bandle-predict | 8.073 | 0.066 | 8.152 | |
| bandle-prior | 6.158 | 0.376 | 6.554 | |
| bandle-process | 8.500 | 0.087 | 8.604 | |
| bandle-sim | 0.436 | 0.007 | 0.443 | |
| bandle | 10.035 | 0.150 | 10.204 | |
| method-mr | 1.898 | 0.030 | 1.931 | |