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This page was generated on 2024-10-18 20:39 -0400 (Fri, 18 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4500
merida1macOS 12.7.5 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4530
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 23/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
affy 1.82.0  (landing page)
Robert D. Shear
Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024)
git_url: https://git.bioconductor.org/packages/affy
git_branch: RELEASE_3_19
git_last_commit: fb130de
git_last_commit_date: 2024-04-30 10:11:11 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

BUILD BIN results for affy on palomino7

To the developers/maintainers of the affy package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/affy.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: affy
Version: 1.82.0
Command: rm -rf affy.buildbin-libdir && mkdir affy.buildbin-libdir && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=affy.buildbin-libdir affy_1.82.0.tar.gz
StartedAt: 2024-10-17 07:17:57 -0400 (Thu, 17 Oct 2024)
EndedAt: 2024-10-17 07:19:00 -0400 (Thu, 17 Oct 2024)
EllapsedTime: 62.2 seconds
RetCode: 0
Status:   OK  
PackageFile: affy_1.82.0.zip
PackageFileSize: 1.492 MiB

Command output

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###
### Running command:
###
###   rm -rf affy.buildbin-libdir && mkdir affy.buildbin-libdir && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=affy.buildbin-libdir affy_1.82.0.tar.gz
###
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* installing *source* package 'affy' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc  -I"E:/biocbuild/bbs-3.19-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DHAVE_ZLIB -I'E:/biocbuild/bbs-3.19-bioc/R/library/preprocessCore/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c chipbackground.c -o chipbackground.o
gcc  -I"E:/biocbuild/bbs-3.19-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DHAVE_ZLIB -I'E:/biocbuild/bbs-3.19-bioc/R/library/preprocessCore/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c getall_locations.c -o getall_locations.o
gcc  -I"E:/biocbuild/bbs-3.19-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DHAVE_ZLIB -I'E:/biocbuild/bbs-3.19-bioc/R/library/preprocessCore/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mas5calls.c -o mas5calls.o
gcc  -I"E:/biocbuild/bbs-3.19-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DHAVE_ZLIB -I'E:/biocbuild/bbs-3.19-bioc/R/library/preprocessCore/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rma2.c -o rma2.o
gcc  -I"E:/biocbuild/bbs-3.19-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -DHAVE_ZLIB -I'E:/biocbuild/bbs-3.19-bioc/R/library/preprocessCore/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rma_common.c -o rma_common.o
gcc -shared -s -static-libgcc -o affy.dll tmp.def chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -LE:/biocbuild/bbs-3.19-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.19-bioc/meat/affy.buildbin-libdir/00LOCK-affy/00new/affy/libs/x64
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'affy' as affy_1.82.0.zip
* DONE (affy)