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This page was generated on 2024-10-18 20:39 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 | 
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 | 
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 | 
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2287/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Xeva 1.20.0  (landing page) Benjamin Haibe-Kains 
 | nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK |  | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK |  | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | NA | |||||||||
| To the developers/maintainers of the Xeva package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Xeva.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: Xeva | 
| Version: 1.20.0 | 
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings Xeva_1.20.0.tar.gz | 
| StartedAt: 2024-10-17 06:22:31 -0400 (Thu, 17 Oct 2024) | 
| EndedAt: 2024-10-17 06:26:59 -0400 (Thu, 17 Oct 2024) | 
| EllapsedTime: 268.4 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: Xeva.Rcheck | 
| Warnings: 0 | 
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###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings Xeva_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/Xeva.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘Xeva/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Xeva’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Xeva’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) drugInform.Rd:7: Lost braces; missing escapes or markup?
     7 | Get the drug information slot from a {XevaSet} object.}
       |                                      ^
checkRd: (-1) drugInform.Rd:21: Lost braces; missing escapes or markup?
    21 | Get the drug information slot from a {XevaSet} object.
       |                                      ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 31 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-bioc/meat/Xeva.Rcheck/00check.log’
for details.
Xeva.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL Xeva ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘Xeva’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Xeva)
Xeva.Rcheck/Xeva-Ex.timings
| name | user | system | elapsed | |
| ABC | 0.005 | 0.000 | 0.005 | |
| AUC | 0.016 | 0.000 | 0.016 | |
| TGI | 0 | 0 | 0 | |
| addExperimentalDesign | 0.091 | 0.004 | 0.095 | |
| angle | 0.006 | 0.000 | 0.006 | |
| batchInfo | 0.098 | 0.004 | 0.102 | |
| createXevaSet | 0.082 | 0.008 | 0.092 | |
| dosePlot | 0.350 | 0.043 | 0.394 | |
| downloadXevaSet | 0.125 | 0.012 | 1.304 | |
| drugInform | 0.096 | 0.004 | 0.101 | |
| drugSensitivitySig | 0.924 | 0.172 | 1.097 | |
| getExperiment | 0.123 | 0.019 | 0.142 | |
| getMolecularProfiles | 0.090 | 0.004 | 0.094 | |
| lmm | 0.071 | 0.008 | 0.079 | |
| mRECIST | 0.002 | 0.000 | 0.002 | |
| modelInfo | 0.098 | 0.000 | 0.098 | |
| plotPDX | 1.113 | 0.132 | 1.245 | |
| plotmRECIST | 1.682 | 0.068 | 1.749 | |
| response | 0.127 | 0.000 | 0.127 | |
| selectModelIds | 0.142 | 0.000 | 0.142 | |
| sensitivity | 0.094 | 0.004 | 0.098 | |
| setResponse | 1.881 | 0.052 | 1.933 | |
| slope | 0.01 | 0.00 | 0.01 | |
| subsetXeva | 0.155 | 0.012 | 0.167 | |
| summarizeMolecularProfiles | 0.118 | 0.012 | 0.130 | |
| summarizeResponse | 0.169 | 0.012 | 0.181 | |
| waterfall | 0.723 | 0.032 | 0.755 | |