Sadiq Saleh
| Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/STROMA4 |
| git_branch: RELEASE_3_19 |
| git_last_commit: 5cdb06a |
| git_last_commit_date: 2024-04-30 10:57:09 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-06-11 14:43 -0400 (Tue, 11 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4757 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4491 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4522 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4468 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2092/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Sadiq Saleh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the STROMA4 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/STROMA4.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: STROMA4 |
| Version: 1.28.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:STROMA4.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings STROMA4_1.28.0.tar.gz |
| StartedAt: 2024-06-09 23:24:44 -0400 (Sun, 09 Jun 2024) |
| EndedAt: 2024-06-09 23:26:16 -0400 (Sun, 09 Jun 2024) |
| EllapsedTime: 92.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: STROMA4.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:STROMA4.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings STROMA4_1.28.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/STROMA4.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘STROMA4/DESCRIPTION’ ... OK
* this is package ‘STROMA4’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘STROMA4’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) B.stroma.property.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) B.stroma.property.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BL1.property.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BL1.property.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BL2.property.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BL2.property.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D.stroma.property.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D.stroma.property.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) E.stroma.property.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) E.stroma.property.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IM.property.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IM.property.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LAR.property.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LAR.property.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) M.property.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) M.property.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MSL.property.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MSL.property.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) T.stroma.property.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) T.stroma.property.Rd:10: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
assign.properties 7.737 0.637 49.537
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.19-bioc/meat/STROMA4.Rcheck/00check.log’
for details.
STROMA4.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL STROMA4 ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘STROMA4’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in fun(libname, pkgname) : Package 'STROMA4' is deprecated and will be removed from Bioconductor version 3.20 ** testing if installed package can be loaded from final location Warning in fun(libname, pkgname) : Package 'STROMA4' is deprecated and will be removed from Bioconductor version 3.20 ** testing if installed package keeps a record of temporary installation path * DONE (STROMA4)
STROMA4.Rcheck/STROMA4-Ex.timings
| name | user | system | elapsed | |
| B.stroma.property | 0.015 | 0.007 | 0.023 | |
| BL1.property | 0.001 | 0.002 | 0.003 | |
| BL2.property | 0.001 | 0.002 | 0.002 | |
| D.stroma.property | 0.001 | 0.001 | 0.001 | |
| E.stroma.property | 0.001 | 0.002 | 0.003 | |
| IM.property | 0.001 | 0.002 | 0.003 | |
| LAR.property | 0.001 | 0.001 | 0.002 | |
| M.property | 0.001 | 0.002 | 0.002 | |
| MSL.property | 0.001 | 0.001 | 0.002 | |
| T.stroma.property | 0.001 | 0.002 | 0.003 | |
| assign.properties | 7.737 | 0.637 | 49.537 | |