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This page was generated on 2024-06-28 17:41 -0400 (Fri, 28 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4760
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4494
merida1macOS 12.7.4 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4508
kjohnson1macOS 13.6.6 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4466
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4362
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1060/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IRISFGM 1.12.0  (landing page)
Yuzhou Chang
Snapshot Date: 2024-06-26 14:00 -0400 (Wed, 26 Jun 2024)
git_url: https://git.bioconductor.org/packages/IRISFGM
git_branch: RELEASE_3_19
git_last_commit: 2cf5874
git_last_commit_date: 2024-04-30 11:31:21 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

BUILD results for IRISFGM on palomino3

To the developers/maintainers of the IRISFGM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IRISFGM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: IRISFGM
Version: 1.12.0
Command: chmod a+r IRISFGM -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data IRISFGM
StartedAt: 2024-06-26 19:38:10 -0400 (Wed, 26 Jun 2024)
EndedAt: 2024-06-26 19:40:46 -0400 (Wed, 26 Jun 2024)
EllapsedTime: 156.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r IRISFGM -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data IRISFGM
###
##############################################################################
##############################################################################


* checking for file 'IRISFGM/DESCRIPTION' ... OK
* preparing 'IRISFGM':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'IRISFGM_Rpackage.Rmd' using rmarkdown
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

Quitting from lines 231-234 [Run_dimReduce] (IRISFGM_Rpackage.Rmd)
Error: processing vignette 'IRISFGM_Rpackage.Rmd' failed with diagnostics:
No layer matching pattern 'data' found. Please run NormalizeData and retry
--- failed re-building 'IRISFGM_Rpackage.Rmd'

SUMMARY: processing the following file failed:
  'IRISFGM_Rpackage.Rmd'

Error: Vignette re-building failed.
Execution halted