Multiple platform build/check report for BioC 3.19 - INSTALL results for HEM on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4763
palomino7	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4500
merida1	macOS 12.7.5 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4530
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4480
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for HEM on kjohnson1

To the developers/maintainers of the HEM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HEM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: HEM

Version: 1.76.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HEM

StartedAt: 2024-10-16 15:35:46 -0400 (Wed, 16 Oct 2024)

EndedAt: 2024-10-16 15:35:53 -0400 (Wed, 16 Oct 2024)

EllapsedTime: 6.2 seconds

RetCode: 0

Status: OK

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HEM
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘HEM’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c hem.c -o hem.o
In file included from hem.c:17:
./random4f.h:126:8: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
double gammadist(alpha)
       ^
hem.c:980:44: warning: variable 'raccept' set but not used [-Wunused-but-set-variable]
        double temp, temp2, MHratio, U, old, new, raccept;
                                                  ^
hem.c:1079:44: warning: variable 'raccept' set but not used [-Wunused-but-set-variable]
        double temp, temp2, MHratio, U, old, new, raccept;
                                                  ^
hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
        int i, j, k, m, n;
                  ^
hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable]
  int i, j, k, l;
               ^
5 warnings generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o HEM.so hem.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-HEM/00new/HEM/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HEM)