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### Running command:
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###   rm -rf GeneticsPed.buildbin-libdir && mkdir GeneticsPed.buildbin-libdir && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneticsPed.buildbin-libdir GeneticsPed_1.66.0.tar.gz
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* installing *source* package 'GeneticsPed' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using Fortran compiler: 'GNU Fortran (GCC) 13.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ainverse.cc -o ainverse.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c eibd.cc -o eibd.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c ggmatmult.f -o ggmatmult.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c gpi.f -o gpi.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c inbreed.cc -o inbreed.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c inverseAdditive.cc -o inverseAdditive.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c meuwissen.cc -o meuwissen.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pedSort.cc -o pedSort.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pedtemplate.cc -o pedtemplate.o
pedtemplate.cc: In member function 'void Pedigree::ShowPed()':
pedtemplate.cc:373:15: warning: format '%d' expects argument of type 'int', but argument 2 has type '__gnu_cxx::__normal_iterator<TPed*, std::vector<TPed> >::difference_type' {aka 'long long int'} [-Wformat=]
  373 |     Rprintf("%d\t", p - pedigree.begin());
      |              ~^     ~~~~~~~~~~~~~~~~~~~~
      |               |       |
      |               int     __gnu_cxx::__normal_iterator<TPed*, std::vector<TPed> >::difference_type {aka long long int}
      |              %lld
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c register.cc -o register.o
gcc  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sargolzaei.c -o sargolzaei.o
sargolzaei.c: In function 'sargolzaei':
sargolzaei.c:52:32: warning: '*Ped[S][0]' may be used uninitialized [-Wmaybe-uninitialized]
   52 |       rPed[rN][0] = Link[Ped[S][0]];
      |                          ~~~~~~^~~
sargolzaei.c:53:34: warning: '*Ped[D][1]' may be used uninitialized [-Wmaybe-uninitialized]
   53 |       rPed[rN++][1] = Link[Ped[D][1]];
      |                            ~~~~~~^~~
sargolzaei.c:58:32: warning: '*Ped[D][0]' may be used uninitialized [-Wmaybe-uninitialized]
   58 |       rPed[rN][0] = Link[Ped[D][0]];
      |                          ~~~~~~^~~
sargolzaei.c:59:34: warning: '*Ped[D][1]' may be used uninitialized [-Wmaybe-uninitialized]
   59 |       rPed[rN++][1] = Link[Ped[D][1]];
      |                            ~~~~~~^~~
sargolzaei.c:72:20: warning: '*Ped[<unknown>][0]' may be used uninitialized [-Wmaybe-uninitialized]
   72 |     if(!Ped[SId[i]][0])
      |         ~~~~~~~~~~~^~~
sargolzaei.c:97:26: warning: '*Ped[<unknown>][0]' may be used uninitialized [-Wmaybe-uninitialized]
   97 |       if(S != Ped[SId[i]][0]) break;
      |               ~~~~~~~~~~~^~~
sargolzaei.c:98:42: warning: '*Ped[<unknown>][1]' may be used uninitialized [-Wmaybe-uninitialized]
   98 |       else F[SId[i]] = x[Link[Ped[SId[i]][1]]] * 0.5f;
      |                               ~~~~~~~~~~~^~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sortped.cc -o sortped.o
g++ -std=gnu++17 -shared -s -static-libgcc -o GeneticsPed.dll tmp.def ainverse.o eibd.o ggmatmult.o gpi.o inbreed.o inverseAdditive.o meuwissen.o pedSort.o pedtemplate.o register.o sargolzaei.o sortped.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgfortran -lm -lquadmath -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/meat/GeneticsPed.buildbin-libdir/00LOCK-GeneticsPed/00new/GeneticsPed/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GeneticsPed' as GeneticsPed_1.66.0.zip
* DONE (GeneticsPed)