Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-06-28 17:41 -0400 (Fri, 28 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4760
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4494
merida1macOS 12.7.4 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4508
kjohnson1macOS 13.6.6 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4466
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4362
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 631/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EBSeqHMM 1.38.0  (landing page)
Ning Leng
Snapshot Date: 2024-06-26 14:00 -0400 (Wed, 26 Jun 2024)
git_url: https://git.bioconductor.org/packages/EBSeqHMM
git_branch: RELEASE_3_19
git_last_commit: e92f274
git_last_commit_date: 2024-04-30 10:40:29 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  ERROR    ERROR  skippedskipped
palomino7Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped

BUILD results for EBSeqHMM on palomino3

To the developers/maintainers of the EBSeqHMM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBSeqHMM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: EBSeqHMM
Version: 1.38.0
Command: chmod a+r EBSeqHMM -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data EBSeqHMM
StartedAt: 2024-06-26 18:33:08 -0400 (Wed, 26 Jun 2024)
EndedAt: 2024-06-26 18:33:11 -0400 (Wed, 26 Jun 2024)
EllapsedTime: 3.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r EBSeqHMM -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data EBSeqHMM
###
##############################################################################
##############################################################################


* checking for file 'EBSeqHMM/DESCRIPTION' ... OK
* preparing 'EBSeqHMM':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'EBSeqHMM' ...
** using staged installation
** R
Error in .install_package_code_files(".", instdir) : 
files in 'F:/biocbuild/bbs-3.19-bioc/tmpdir/RtmpI561oD/Rbuild227077dd548c/EBSeqHMM/R' missing from 'Collate' field:
  zzz.R
ERROR: unable to collate and parse R files for package 'EBSeqHMM'
* removing 'F:/biocbuild/bbs-3.19-bioc/tmpdir/RtmpI561oD/Rinst22705fd8789d/EBSeqHMM'
      -----------------------------------
ERROR: package installation failed