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This page was generated on 2024-10-18 20:41 -0400 (Fri, 18 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4500
merida1macOS 12.7.5 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4530
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 223/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiRewire 3.36.0  (landing page)
Andrea Gobbi
Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024)
git_url: https://git.bioconductor.org/packages/BiRewire
git_branch: RELEASE_3_19
git_last_commit: a8b3eb6
git_last_commit_date: 2024-04-30 10:33:26 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

INSTALL results for BiRewire on kjohnson1

To the developers/maintainers of the BiRewire package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiRewire.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BiRewire
Version: 3.36.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BiRewire
StartedAt: 2024-10-16 15:39:18 -0400 (Wed, 16 Oct 2024)
EndedAt: 2024-10-16 15:39:28 -0400 (Wed, 16 Oct 2024)
EllapsedTime: 10.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BiRewire
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘BiRewire’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c BiRewire.c -o BiRewire.o
BiRewire.c:149:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                 ~~             ^~~~~~~~~~~
                                 %ld
BiRewire.c:221:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                                 ~~             ^~~~~~~~~~~
                                                 %ld
BiRewire.c:229:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                 ~~             ^~~~~~~~~~~
                                 %ld
BiRewire.c:280:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                 ~~             ^~~~~~~~~~~
                                 %ld
BiRewire.c:332:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                                 ~~             ^~~~~~~~~~~
                                                 %ld
BiRewire.c:339:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                 ~~             ^~~~~~~~~~~
                                 %ld
BiRewire.c:402:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                 ~~             ^~~~~~~~~~~
                                 %ld
BiRewire.c:454:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                                 ~~             ^~~~~~~~~~~
                                                 %ld
BiRewire.c:461:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                 ~~             ^~~~~~~~~~~
                                 %ld
BiRewire.c:588:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                 ~~             ^~~~~~~~~~~
                                 %ld
BiRewire.c:652:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                                 ~~             ^~~~~~~~~~~
                                                 %ld
BiRewire.c:737:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                 ~~             ^~~~~~~~~~~
                                 %ld
BiRewire.c:844:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                 ~~             ^~~~~~~~~~~
                                 %ld
BiRewire.c:893:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                                 ~~             ^~~~~~~~~~~
                                                 %ld
BiRewire.c:962:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                 ~~             ^~~~~~~~~~~
                                 %ld
BiRewire.c:1096:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                 ~~             ^~~~~~~~~~~
                                 %ld
BiRewire.c:1144:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                                 ~~             ^~~~~~~~~~~
                                                 %ld
BiRewire.c:1183:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
                Rprintf("DONE in %d seconds \n",-(tin-tfin));
                                 ~~             ^~~~~~~~~~~
                                 %ld
18 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c interface.c -o interface.o
interface.c:28:23: warning: variable 'e' set but not used [-Wunused-but-set-variable]
        size_t i,dim,nc,nr,j,e=0;
                             ^
interface.c:105:68: warning: data argument not used by format string [-Wformat-extra-args]
                warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:879:20: note: expanded from macro 'asInteger'
#define asInteger               Rf_asInteger
                                ^
interface.c:147:68: warning: data argument not used by format string [-Wformat-extra-args]
                warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:879:20: note: expanded from macro 'asInteger'
#define asInteger               Rf_asInteger
                                ^
interface.c:167:23: warning: variable 'e' set but not used [-Wunused-but-set-variable]
        size_t i,dim,nc,nr,j,e=0;
                             ^
interface.c:252:68: warning: data argument not used by format string [-Wformat-extra-args]
                warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:879:20: note: expanded from macro 'asInteger'
#define asInteger               Rf_asInteger
                                ^
interface.c:296:68: warning: data argument not used by format string [-Wformat-extra-args]
                warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:879:20: note: expanded from macro 'asInteger'
#define asInteger               Rf_asInteger
                                ^
6 warnings generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o BiRewire.so BiRewire.o interface.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-BiRewire/00new/BiRewire/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiRewire)