Multiple platform build/check report for BioC 3.19 - INSTALL results for BUS on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4763
palomino7	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4500
merida1	macOS 12.7.5 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4530
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4480
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for BUS on nebbiolo1

To the developers/maintainers of the BUS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BUS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BUS

Version: 1.60.0

Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL BUS

StartedAt: 2024-10-16 16:41:19 -0400 (Wed, 16 Oct 2024)

EndedAt: 2024-10-16 16:41:22 -0400 (Wed, 16 Oct 2024)

EllapsedTime: 3.0 seconds

RetCode: 0

Status: OK

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL BUS
###
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* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘BUS’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall  -c BUS.cpp -o BUS.o
BUS.cpp: In function ‘SEXPREC* MINempirical(SEXP, SEXP, SEXP, SEXP, SEXP)’:
BUS.cpp:22:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   22 |       for( int i=0; i<*ncols1; ++i )
      |       ^~~
In file included from /home/biocbuild/bbs-3.19-bioc/R/include/Rdefines.h:41,
                 from BUS.h:9,
                 from BUS.cpp:1:
/home/biocbuild/bbs-3.19-bioc/R/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  372 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
BUS.cpp:27:10: note: in expansion of macro ‘UNPROTECT’
   27 |          UNPROTECT(6);
      |          ^~~~~~~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o BUS.so BUS.o -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-BUS/00new/BUS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BUS)