Xiuwen Zheng
| Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024) |
| git_url: https://git.bioconductor.org/packages/gdsfmt |
| git_branch: RELEASE_3_18 |
| git_last_commit: 47ebf72 |
| git_last_commit_date: 2023-10-24 10:41:01 -0400 (Tue, 24 Oct 2023) |
| Back to Mac ARM64 build report for BioC 3.18 |
|
This page was generated on 2024-04-18 11:32:10 -0400 (Thu, 18 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 783/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gdsfmt 1.38.0 (landing page) Xiuwen Zheng
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | WARNINGS | OK | | |||||||
|
To the developers/maintainers of the gdsfmt package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gdsfmt |
| Version: 1.38.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gdsfmt.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gdsfmt_1.38.0.tar.gz |
| StartedAt: 2024-04-17 14:25:42 -0400 (Wed, 17 Apr 2024) |
| EndedAt: 2024-04-17 14:29:14 -0400 (Wed, 17 Apr 2024) |
| EllapsedTime: 212.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: gdsfmt.Rcheck |
| Warnings: 1 |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gdsfmt.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gdsfmt_1.38.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/gdsfmt.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gdsfmt/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gdsfmt’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gdsfmt’ can be installed ... WARNING
Found the following significant warnings:
ZLIB/adler32.c:63:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/adler32.c:134:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/adler32.c:143:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/adler32.c:172:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/adler32.c:180:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/compress.c:22:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/compress.c:68:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/compress.c:81:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/crc32.c:551:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/crc32.c:575:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/crc32.c:622:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/crc32.c:1072:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/crc32.c:1081:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/crc32.c:1093:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/crc32.c:1102:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/crc32.c:1112:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/crc32.c:1119:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:198:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:225:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:237:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:389:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:412:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:481:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:503:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:541:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:553:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:564:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:578:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:605:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:654:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:696:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:768:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:782:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:815:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:1130:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:1156:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:1215:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:1245:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:1278:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:1527:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:1690:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:1877:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:1979:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:2110:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/deflate.c:2184:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/infback.c:28:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/infback.c:83:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/infback.c:251:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/infback.c:635:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inffast.c:50:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:105:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:119:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:145:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:158:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:198:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:242:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:250:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:281:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:399:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:625:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:1304:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:1318:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:1341:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:1376:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:1404:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:1427:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:1485:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:1495:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:1542:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:1560:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:1575:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inflate.c:1588:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/inftrees.c:32:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:379:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:407:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:451:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:486:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:572:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:615:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:703:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:748:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:799:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:834:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:863:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:887:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:897:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:912:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:1014:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:1042:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:1102:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:1136:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:1151:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/trees.c:1168:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/uncompr.c:27:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/uncompr.c:86:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/zutil.c:136:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/zutil.c:308:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
ZLIB/zutil.c:318:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
See ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/gdsfmt.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/gdsfmt.Rcheck/00check.log’
for details.
gdsfmt.Rcheck/00install.out
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gdsfmt
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘gdsfmt’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_CoreArray.cpp -o R_CoreArray.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gdsfmt.cpp -o gdsfmt.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c digest.cpp -o digest.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dAny.cpp -o CoreArray/dAny.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dBase.cpp -o CoreArray/dBase.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dFile.cpp -o CoreArray/dFile.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dRealGDS.cpp -o CoreArray/dRealGDS.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dStrGDS.cpp -o CoreArray/dStrGDS.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dStream.cpp -o CoreArray/dStream.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dSparse.cpp -o CoreArray/dSparse.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c -g0 ZLIB/adler32.c -o ZLIB/adler32.o
ZLIB/adler32.c:63:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
uLong ZEXPORT adler32_z(adler, buf, len)
^
ZLIB/adler32.c:134:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
uLong ZEXPORT adler32(adler, buf, len)
^
ZLIB/adler32.c:143:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local uLong adler32_combine_(adler1, adler2, len2)
^
ZLIB/adler32.c:172:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
uLong ZEXPORT adler32_combine(adler1, adler2, len2)
^
ZLIB/adler32.c:180:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
uLong ZEXPORT adler32_combine64(adler1, adler2, len2)
^
5 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c -g0 ZLIB/compress.c -o ZLIB/compress.o
ZLIB/compress.c:22:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT compress2(dest, destLen, source, sourceLen, level)
^
ZLIB/compress.c:68:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT compress(dest, destLen, source, sourceLen)
^
ZLIB/compress.c:81:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
uLong ZEXPORT compressBound(sourceLen)
^
3 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c -g0 ZLIB/crc32.c -o ZLIB/crc32.o
ZLIB/crc32.c:551:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local z_crc_t multmodp(a, b)
^
ZLIB/crc32.c:575:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local z_crc_t x2nmodp(n, k)
^
ZLIB/crc32.c:622:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
unsigned long ZEXPORT crc32_z(crc, buf, len)
^
ZLIB/crc32.c:1072:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
unsigned long ZEXPORT crc32(crc, buf, len)
^
ZLIB/crc32.c:1081:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
uLong ZEXPORT crc32_combine64(crc1, crc2, len2)
^
ZLIB/crc32.c:1093:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
uLong ZEXPORT crc32_combine(crc1, crc2, len2)
^
ZLIB/crc32.c:1102:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
uLong ZEXPORT crc32_combine_gen64(len2)
^
ZLIB/crc32.c:1112:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
uLong ZEXPORT crc32_combine_gen(len2)
^
ZLIB/crc32.c:1119:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
uLong ZEXPORT crc32_combine_op(crc1, crc2, op)
^
9 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c -g0 ZLIB/deflate.c -o ZLIB/deflate.o
ZLIB/deflate.c:198:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void slide_hash(s)
^
ZLIB/deflate.c:225:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflateInit_(strm, level, version, stream_size)
^
ZLIB/deflate.c:237:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflateInit2_(strm, level, method, windowBits, memLevel, strategy,
^
ZLIB/deflate.c:389:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local int deflateStateCheck(strm)
^
ZLIB/deflate.c:412:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflateSetDictionary(strm, dictionary, dictLength)
^
ZLIB/deflate.c:481:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflateGetDictionary(strm, dictionary, dictLength)
^
ZLIB/deflate.c:503:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflateResetKeep(strm)
^
ZLIB/deflate.c:541:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflateReset(strm)
^
ZLIB/deflate.c:553:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflateSetHeader(strm, head)
^
ZLIB/deflate.c:564:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflatePending(strm, pending, bits)
^
ZLIB/deflate.c:578:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflatePrime(strm, bits, value)
^
ZLIB/deflate.c:605:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflateParams(strm, level, strategy)
^
ZLIB/deflate.c:654:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflateTune(strm, good_length, max_lazy, nice_length, max_chain)
^
ZLIB/deflate.c:696:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
uLong ZEXPORT deflateBound(strm, sourceLen)
^
ZLIB/deflate.c:768:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void putShortMSB(s, b)
^
ZLIB/deflate.c:782:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void flush_pending(strm)
^
ZLIB/deflate.c:815:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflate(strm, flush)
^
ZLIB/deflate.c:1130:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflateEnd(strm)
^
ZLIB/deflate.c:1156:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT deflateCopy(dest, source)
^
ZLIB/deflate.c:1215:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local unsigned read_buf(strm, buf, size)
^
ZLIB/deflate.c:1245:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void lm_init(s)
^
ZLIB/deflate.c:1278:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local uInt longest_match(s, cur_match)
^
ZLIB/deflate.c:1527:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void fill_window(s)
^
ZLIB/deflate.c:1690:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local block_state deflate_stored(s, flush)
^
ZLIB/deflate.c:1877:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local block_state deflate_fast(s, flush)
^
ZLIB/deflate.c:1979:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local block_state deflate_slow(s, flush)
^
ZLIB/deflate.c:2110:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local block_state deflate_rle(s, flush)
^
ZLIB/deflate.c:2184:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local block_state deflate_huff(s, flush)
^
28 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c -g0 ZLIB/infback.c -o ZLIB/infback.o
ZLIB/infback.c:28:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateBackInit_(strm, windowBits, window, version, stream_size)
^
ZLIB/infback.c:83:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void fixedtables(state)
^
ZLIB/infback.c:251:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateBack(strm, in, in_desc, out, out_desc)
^
ZLIB/infback.c:635:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateBackEnd(strm)
^
4 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c -g0 ZLIB/inffast.c -o ZLIB/inffast.o
ZLIB/inffast.c:50:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
void ZLIB_INTERNAL inflate_fast(strm, start)
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c -g0 ZLIB/inflate.c -o ZLIB/inflate.o
ZLIB/inflate.c:105:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local int inflateStateCheck(strm)
^
ZLIB/inflate.c:119:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateResetKeep(strm)
^
ZLIB/inflate.c:145:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateReset(strm)
^
ZLIB/inflate.c:158:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateReset2(strm, windowBits)
^
ZLIB/inflate.c:198:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateInit2_(strm, windowBits, version, stream_size)
^
ZLIB/inflate.c:242:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateInit_(strm, version, stream_size)
^
ZLIB/inflate.c:250:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflatePrime(strm, bits, value)
^
ZLIB/inflate.c:281:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void fixedtables(state)
^
ZLIB/inflate.c:399:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local int updatewindow(strm, end, copy)
^
ZLIB/inflate.c:625:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflate(strm, flush)
^
ZLIB/inflate.c:1304:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateEnd(strm)
^
ZLIB/inflate.c:1318:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateGetDictionary(strm, dictionary, dictLength)
^
ZLIB/inflate.c:1341:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateSetDictionary(strm, dictionary, dictLength)
^
ZLIB/inflate.c:1376:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateGetHeader(strm, head)
^
ZLIB/inflate.c:1404:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local unsigned syncsearch(have, buf, len)
^
ZLIB/inflate.c:1427:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateSync(strm)
^
ZLIB/inflate.c:1485:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateSyncPoint(strm)
^
ZLIB/inflate.c:1495:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateCopy(dest, source)
^
ZLIB/inflate.c:1542:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateUndermine(strm, subvert)
^
ZLIB/inflate.c:1560:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT inflateValidate(strm, check)
^
ZLIB/inflate.c:1575:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
long ZEXPORT inflateMark(strm)
^
ZLIB/inflate.c:1588:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
unsigned long ZEXPORT inflateCodesUsed(strm)
^
22 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c -g0 ZLIB/inftrees.c -o ZLIB/inftrees.o
ZLIB/inftrees.c:32:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZLIB_INTERNAL inflate_table(type, lens, codes, table, bits, work)
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c -g0 ZLIB/trees.c -o ZLIB/trees.o
ZLIB/trees.c:379:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
void ZLIB_INTERNAL _tr_init(s)
^
ZLIB/trees.c:407:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void init_block(s)
^
ZLIB/trees.c:451:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void pqdownheap(s, tree, k)
^
ZLIB/trees.c:486:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void gen_bitlen(s, desc)
^
ZLIB/trees.c:572:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void gen_codes(tree, max_code, bl_count)
^
ZLIB/trees.c:615:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void build_tree(s, desc)
^
ZLIB/trees.c:703:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void scan_tree(s, tree, max_code)
^
ZLIB/trees.c:748:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void send_tree(s, tree, max_code)
^
ZLIB/trees.c:799:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local int build_bl_tree(s)
^
ZLIB/trees.c:834:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void send_all_trees(s, lcodes, dcodes, blcodes)
^
ZLIB/trees.c:863:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
void ZLIB_INTERNAL _tr_stored_block(s, buf, stored_len, last)
^
ZLIB/trees.c:887:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
void ZLIB_INTERNAL _tr_flush_bits(s)
^
ZLIB/trees.c:897:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
void ZLIB_INTERNAL _tr_align(s)
^
ZLIB/trees.c:912:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
void ZLIB_INTERNAL _tr_flush_block(s, buf, stored_len, last)
^
ZLIB/trees.c:1014:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZLIB_INTERNAL _tr_tally(s, dist, lc)
^
ZLIB/trees.c:1042:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void compress_block(s, ltree, dtree)
^
ZLIB/trees.c:1102:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local int detect_data_type(s)
^
ZLIB/trees.c:1136:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local unsigned bi_reverse(code, len)
^
ZLIB/trees.c:1151:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void bi_flush(s)
^
ZLIB/trees.c:1168:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
local void bi_windup(s)
^
20 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c -g0 ZLIB/uncompr.c -o ZLIB/uncompr.o
ZLIB/uncompr.c:27:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT uncompress2(dest, destLen, source, sourceLen)
^
ZLIB/uncompr.c:86:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
int ZEXPORT uncompress(dest, destLen, source, sourceLen)
^
2 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c -g0 ZLIB/zutil.c -o ZLIB/zutil.o
ZLIB/zutil.c:136:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
const char * ZEXPORT zError(err)
^
ZLIB/zutil.c:308:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
voidpf ZLIB_INTERNAL zcalloc(opaque, items, size)
^
ZLIB/zutil.c:318:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
void ZLIB_INTERNAL zcfree(opaque, ptr)
^
3 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c LZ4/lz4.c -o LZ4/lz4.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c LZ4/lz4hc.c -o LZ4/lz4hc.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c LZ4/lz4frame.c -o LZ4/lz4frame.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c LZ4/xxhash.c -o LZ4/xxhash.o
cd XZ && tar -xzf xz-5.2.9.tar.gz
cd XZ/xz-5.2.9 && \
./configure CC="clang -arch arm64" CPP="clang -arch arm64 -E" CXX="clang++ -arch arm64 -std=gnu++17" CXXCPP="" --build="" \
--with-pic --enable-silent-rules --quiet --disable-xz --disable-shared > /dev/null
cd XZ/xz-5.2.9/src/liblzma && make
Making all in api
make[2]: Nothing to be done for `all'.
CC liblzma_la-tuklib_physmem.lo
CC liblzma_la-tuklib_cpucores.lo
CC liblzma_la-common.lo
CC liblzma_la-block_util.lo
CC liblzma_la-easy_preset.lo
CC liblzma_la-filter_common.lo
CC liblzma_la-hardware_physmem.lo
CC liblzma_la-index.lo
CC liblzma_la-stream_flags_common.lo
CC liblzma_la-vli_size.lo
CC liblzma_la-hardware_cputhreads.lo
CC liblzma_la-alone_encoder.lo
CC liblzma_la-block_buffer_encoder.lo
CC liblzma_la-block_encoder.lo
CC liblzma_la-block_header_encoder.lo
CC liblzma_la-easy_buffer_encoder.lo
CC liblzma_la-easy_encoder.lo
CC liblzma_la-easy_encoder_memusage.lo
CC liblzma_la-filter_buffer_encoder.lo
CC liblzma_la-filter_encoder.lo
CC liblzma_la-filter_flags_encoder.lo
CC liblzma_la-index_encoder.lo
CC liblzma_la-stream_buffer_encoder.lo
CC liblzma_la-stream_encoder.lo
CC liblzma_la-stream_flags_encoder.lo
CC liblzma_la-vli_encoder.lo
CC liblzma_la-outqueue.lo
CC liblzma_la-stream_encoder_mt.lo
CC liblzma_la-alone_decoder.lo
CC liblzma_la-auto_decoder.lo
CC liblzma_la-block_buffer_decoder.lo
CC liblzma_la-block_decoder.lo
CC liblzma_la-block_header_decoder.lo
CC liblzma_la-easy_decoder_memusage.lo
CC liblzma_la-filter_buffer_decoder.lo
CC liblzma_la-filter_decoder.lo
CC liblzma_la-filter_flags_decoder.lo
CC liblzma_la-index_decoder.lo
CC liblzma_la-index_hash.lo
CC liblzma_la-stream_buffer_decoder.lo
CC liblzma_la-stream_decoder.lo
CC liblzma_la-stream_flags_decoder.lo
CC liblzma_la-vli_decoder.lo
CC liblzma_la-check.lo
CC liblzma_la-crc32_table.lo
CC liblzma_la-crc32_fast.lo
CC liblzma_la-crc64_table.lo
CC liblzma_la-crc64_fast.lo
CC liblzma_la-sha256.lo
CC liblzma_la-lz_encoder.lo
CC liblzma_la-lz_encoder_mf.lo
CC liblzma_la-lz_decoder.lo
CC liblzma_la-lzma_encoder_presets.lo
CC liblzma_la-lzma_encoder.lo
CC liblzma_la-lzma_encoder_optimum_fast.lo
CC liblzma_la-lzma_encoder_optimum_normal.lo
CC liblzma_la-fastpos_table.lo
CC liblzma_la-lzma_decoder.lo
CC liblzma_la-lzma2_encoder.lo
CC liblzma_la-lzma2_decoder.lo
CC liblzma_la-price_table.lo
CC liblzma_la-delta_common.lo
CC liblzma_la-delta_encoder.lo
CC liblzma_la-delta_decoder.lo
CC liblzma_la-simple_coder.lo
CC liblzma_la-simple_encoder.lo
CC liblzma_la-simple_decoder.lo
CC liblzma_la-x86.lo
CC liblzma_la-powerpc.lo
CC liblzma_la-ia64.lo
CC liblzma_la-arm.lo
CC liblzma_la-armthumb.lo
CC liblzma_la-sparc.lo
CCLD liblzma.la
PC liblzma.pc
cp XZ/xz-5.2.9/src/liblzma/.libs/liblzma.a .
rm -rf XZ/xz-5.2.9/dos
rm -rf XZ/xz-5.2.9/po
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o gdsfmt.so R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dRealGDS.o CoreArray/dSerial.o CoreArray/dStrGDS.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dSparse.o CoreArray/dVLIntGDS.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o ./liblzma.a -lpthread -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-gdsfmt/00new/gdsfmt/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gdsfmt)
gdsfmt.Rcheck/tests/runTests.Rout
R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> options(test.verbose=FALSE)
> BiocGenerics:::testPackage("gdsfmt")
RUNIT TEST PROTOCOL -- Wed Apr 17 14:29:03 2024
***********************************************
Number of test functions: 25
Number of errors: 0
Number of failures: 0
1 Test Suite :
gdsfmt RUnit Tests - 25 test functions, 0 errors, 0 failures
Number of test functions: 25
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
145.043 26.881 176.738
gdsfmt.Rcheck/gdsfmt-Ex.timings
| name | user | system | elapsed | |
| add.gdsn | 0.093 | 0.018 | 0.113 | |
| addfile.gdsn | 0.006 | 0.005 | 0.011 | |
| addfolder.gdsn | 0.023 | 0.006 | 0.029 | |
| append.gdsn | 0.018 | 0.004 | 0.022 | |
| apply.gdsn | 0.025 | 0.017 | 0.044 | |
| assign.gdsn | 0.019 | 0.008 | 0.028 | |
| cache.gdsn | 0.001 | 0.002 | 0.003 | |
| cleanup.gds | 0.009 | 0.004 | 0.015 | |
| closefn.gds | 0.000 | 0.001 | 0.002 | |
| clusterApply.gdsn | 0.041 | 0.020 | 0.508 | |
| cnt.gdsn | 0.001 | 0.002 | 0.004 | |
| compression.gdsn | 0.004 | 0.002 | 0.006 | |
| copyto.gdsn | 0.028 | 0.005 | 0.037 | |
| createfn.gds | 0.005 | 0.002 | 0.007 | |
| delete.attr.gdsn | 0.002 | 0.002 | 0.005 | |
| delete.gdsn | 0.005 | 0.002 | 0.008 | |
| diagnosis.gds | 0.010 | 0.005 | 0.016 | |
| digest.gdsn | 0.066 | 0.010 | 0.077 | |
| exist.gdsn | 0.001 | 0.002 | 0.003 | |
| gdsfmt-package | 0.033 | 0.009 | 0.044 | |
| get.attr.gdsn | 0.006 | 0.001 | 0.008 | |
| getfile.gdsn | 0.005 | 0.004 | 0.008 | |
| getfolder.gdsn | 0.027 | 0.003 | 0.031 | |
| index.gdsn | 0.009 | 0.002 | 0.011 | |
| is.element.gdsn | 0.002 | 0.003 | 0.005 | |
| is.sparse.gdsn | 1.341 | 0.061 | 1.411 | |
| lasterr.gds | 0.000 | 0.001 | 0.001 | |
| ls.gdsn | 0.001 | 0.002 | 0.004 | |
| moveto.gdsn | 0.031 | 0.006 | 0.038 | |
| name.gdsn | 0.001 | 0.002 | 0.004 | |
| objdesp.gdsn | 0.013 | 0.004 | 0.017 | |
| openfn.gds | 0.005 | 0.003 | 0.008 | |
| permdim.gdsn | 0.007 | 0.006 | 0.014 | |
| print.gds.class | 0.014 | 0.004 | 0.017 | |
| put.attr.gdsn | 0.003 | 0.002 | 0.006 | |
| read.gdsn | 0.011 | 0.005 | 0.018 | |
| readex.gdsn | 0.005 | 0.005 | 0.011 | |
| readmode.gdsn | 0.002 | 0.002 | 0.004 | |
| rename.gdsn | 0.004 | 0.001 | 0.006 | |
| setdim.gdsn | 0.007 | 0.004 | 0.012 | |
| showfile.gds | 0.003 | 0.002 | 0.005 | |
| summarize.gdsn | 0.002 | 0.003 | 0.004 | |
| sync.gds | 0.003 | 0.002 | 0.004 | |
| system.gds | 0.004 | 0.002 | 0.006 | |
| unload.gdsn | 0.002 | 0.002 | 0.004 | |
| write.gdsn | 0.001 | 0.003 | 0.004 | |