| Back to Mac ARM64 build report for BioC 3.18 |
|
This page was generated on 2024-04-18 11:32:17 -0400 (Thu, 18 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1754/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RImmPort 1.30.0 (landing page) Zicheng Hu
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the RImmPort package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RImmPort |
| Version: 1.30.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RImmPort_1.30.0.tar.gz |
| StartedAt: 2024-04-18 01:21:00 -0400 (Thu, 18 Apr 2024) |
| EndedAt: 2024-04-18 01:21:55 -0400 (Thu, 18 Apr 2024) |
| EllapsedTime: 55.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RImmPort.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RImmPort_1.30.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/RImmPort.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RImmPort/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RImmPort’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RImmPort’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
buildNewSqliteDb: no visible global function definition for
‘dbListTables’
Undefined global functions or variables:
dbListTables
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/RImmPort.Rcheck/00check.log’
for details.
RImmPort.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RImmPort ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘RImmPort’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RImmPort)
RImmPort.Rcheck/RImmPort-Ex.timings
| name | user | system | elapsed | |
| Events-class | 0.511 | 0.044 | 0.643 | |
| Findings-class | 0.243 | 0.016 | 0.259 | |
| Interventions-class | 0.210 | 0.013 | 0.223 | |
| SpecialPurpose-class | 0.208 | 0.011 | 0.218 | |
| Study-class | 0.214 | 0.012 | 0.226 | |
| TrialDesign-class | 0.269 | 0.014 | 0.282 | |
| buildNewSqliteDb | 0.000 | 0.000 | 0.001 | |
| getAssayDataOfStudies | 0.094 | 0.009 | 0.103 | |
| getDomainCode | 0 | 0 | 0 | |
| getDomainDataOfStudies | 0.051 | 0.004 | 0.056 | |
| getListOfAssayTypes | 0 | 0 | 0 | |
| getListOfDomains | 0 | 0 | 0 | |
| getListOfStudies | 0.047 | 0.004 | 0.052 | |
| getStudiesWithSpecificAssayData | 0.052 | 0.005 | 0.057 | |
| getStudiesWithSpecificDomainData | 0.052 | 0.005 | 0.058 | |
| getStudy | 0.227 | 0.014 | 0.241 | |
| loadSerializedStudyData | 0.004 | 0.002 | 0.006 | |
| mergeDomainAndSupplemental | 0.160 | 0.009 | 0.170 | |
| serialzeStudyData | 0.370 | 0.032 | 0.407 | |
| setImmPortDataSource | 0.046 | 0.005 | 0.050 | |