| Back to Mac ARM64 build report for BioC 3.18 |
|
This page was generated on 2024-04-18 11:32:11 -0400 (Thu, 18 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 948/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCBricks 1.20.0 (landing page) Koustav Pal
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the HiCBricks package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HiCBricks |
| Version: 1.20.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.20.0.tar.gz |
| StartedAt: 2024-04-17 16:15:27 -0400 (Wed, 17 Apr 2024) |
| EndedAt: 2024-04-17 16:18:15 -0400 (Wed, 17 Apr 2024) |
| EllapsedTime: 167.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HiCBricks.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.20.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/HiCBricks.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HiCBricks/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HiCBricks’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HiCBricks’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
| name | user | system | elapsed | |
| BrickContainer_change_experiment_name | 1.148 | 0.105 | 1.261 | |
| BrickContainer_change_output_directory | 0.730 | 0.079 | 0.810 | |
| BrickContainer_get_path_to_file | 0.688 | 0.088 | 0.817 | |
| BrickContainer_list_chromosomes | 0.685 | 0.088 | 0.775 | |
| BrickContainer_list_experiment_name | 0.674 | 0.075 | 0.752 | |
| BrickContainer_list_files | 0.695 | 0.082 | 0.790 | |
| BrickContainer_list_output_directory | 0.678 | 0.074 | 0.753 | |
| BrickContainer_list_resolutions | 0.673 | 0.094 | 0.781 | |
| BrickContainer_unlink_resolution | 1.537 | 0.203 | 1.744 | |
| Brick_add_ranges | 1.681 | 0.130 | 1.813 | |
| Brick_call_compartments | 1.282 | 0.192 | 1.489 | |
| Brick_export_to_sparse | 2.361 | 0.351 | 2.750 | |
| Brick_fetch_range_index | 0.892 | 0.120 | 1.025 | |
| Brick_fetch_row_vector | 1.402 | 0.233 | 1.666 | |
| Brick_get_bintable | 1.163 | 0.106 | 1.278 | |
| Brick_get_chrominfo | 0.693 | 0.086 | 0.784 | |
| Brick_get_entire_matrix | 1.083 | 0.156 | 1.243 | |
| Brick_get_matrix | 1.040 | 0.144 | 1.185 | |
| Brick_get_matrix_mcols | 1.060 | 0.166 | 1.234 | |
| Brick_get_matrix_within_coords | 1.523 | 0.194 | 1.732 | |
| Brick_get_ranges | 0.700 | 0.092 | 0.796 | |
| Brick_get_values_by_distance | 1.124 | 0.173 | 1.300 | |
| Brick_get_vector_values | 1.067 | 0.149 | 1.227 | |
| Brick_list_matrices | 0.717 | 0.090 | 0.837 | |
| Brick_list_matrix_mcols | 0.665 | 0.079 | 0.746 | |
| Brick_list_mcool_normalisations | 0.000 | 0.000 | 0.001 | |
| Brick_list_mcool_resolutions | 0.001 | 0.000 | 0.000 | |
| Brick_list_rangekeys | 0.675 | 0.076 | 0.755 | |
| Brick_list_ranges_mcols | 0.693 | 0.097 | 0.791 | |
| Brick_load_cis_matrix_till_distance | 0.940 | 0.135 | 1.077 | |
| Brick_load_data_from_mcool | 0.000 | 0.000 | 0.001 | |
| Brick_load_data_from_sparse | 0.000 | 0.001 | 0.001 | |
| Brick_load_matrix | 1.016 | 0.144 | 1.202 | |
| Brick_local_score_differentiator | 1.582 | 0.196 | 1.784 | |
| Brick_make_ranges | 0.010 | 0.001 | 0.011 | |
| Brick_matrix_dimensions | 1.036 | 0.147 | 1.194 | |
| Brick_matrix_exists | 1.020 | 0.325 | 1.350 | |
| Brick_matrix_filename | 1.007 | 0.284 | 1.292 | |
| Brick_matrix_isdone | 1.036 | 0.174 | 1.242 | |
| Brick_matrix_issparse | 1.051 | 0.268 | 1.338 | |
| Brick_matrix_maxdist | 1.052 | 0.198 | 1.266 | |
| Brick_matrix_minmax | 1.062 | 0.245 | 1.319 | |
| Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
| Brick_rangekey_exists | 0.727 | 0.128 | 0.863 | |
| Brick_return_region_position | 0.814 | 0.130 | 0.953 | |
| Brick_vizart_plot_heatmap | 2.050 | 0.288 | 2.374 | |
| Create_many_Bricks | 0.737 | 0.119 | 0.865 | |
| Create_many_Bricks_from_mcool | 0.000 | 0.001 | 0.001 | |
| load_BrickContainer | 0.771 | 0.111 | 0.903 | |