| Back to Mac ARM64 build report for BioC 3.18 |
|
This page was generated on 2024-04-18 11:32:11 -0400 (Thu, 18 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 974/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.8.0 (landing page) Matineh Rahmatbakhsh
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the HPiP package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.8.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.8.0.tar.gz |
| StartedAt: 2024-04-17 16:31:08 -0400 (Wed, 17 Apr 2024) |
| EndedAt: 2024-04-17 16:37:35 -0400 (Wed, 17 Apr 2024) |
| EllapsedTime: 386.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/HPiP.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 54.664 2.296 57.112
FSmethod 53.491 2.132 55.901
corr_plot 51.751 2.440 54.534
pred_ensembel 16.317 0.389 13.827
enrichfindP 0.513 0.080 28.657
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 104.049264
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.487702
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.866829
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 111.079768
iter 10 value 91.261674
iter 20 value 90.821890
final value 90.821486
converged
Fitting Repeat 5
# weights: 103
initial value 100.687990
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 103.264086
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 113.696761
final value 94.354396
converged
Fitting Repeat 3
# weights: 305
initial value 114.283953
iter 10 value 94.484211
iter 10 value 94.484211
iter 10 value 94.484211
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 107.781539
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 102.050817
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 125.917983
final value 94.354396
converged
Fitting Repeat 2
# weights: 507
initial value 95.365146
final value 94.484137
converged
Fitting Repeat 3
# weights: 507
initial value 101.395673
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 111.819333
iter 10 value 94.354476
final value 94.354396
converged
Fitting Repeat 5
# weights: 507
initial value 112.353168
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.630055
iter 10 value 94.456155
iter 20 value 88.886954
iter 30 value 86.813104
iter 40 value 86.241168
iter 50 value 86.083284
iter 60 value 86.082450
final value 86.082428
converged
Fitting Repeat 2
# weights: 103
initial value 102.591118
iter 10 value 94.542628
iter 20 value 94.490689
iter 30 value 94.477634
iter 40 value 88.289082
iter 50 value 87.959666
iter 60 value 87.194084
iter 70 value 85.039024
iter 80 value 84.572191
iter 90 value 84.037322
iter 100 value 83.754617
final value 83.754617
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.459704
iter 10 value 94.501649
iter 20 value 89.699889
iter 30 value 86.933057
iter 40 value 86.413954
iter 50 value 86.238089
iter 60 value 86.206394
iter 60 value 86.206394
final value 86.206394
converged
Fitting Repeat 4
# weights: 103
initial value 103.439480
iter 10 value 94.459641
iter 20 value 93.301448
iter 30 value 87.606533
iter 40 value 86.994352
iter 50 value 86.234548
iter 60 value 86.029046
iter 70 value 85.329288
iter 80 value 85.084147
iter 90 value 85.069967
final value 85.068001
converged
Fitting Repeat 5
# weights: 103
initial value 102.508460
iter 10 value 94.024030
iter 20 value 90.016580
iter 30 value 86.521506
iter 40 value 85.062543
iter 50 value 84.902798
iter 60 value 84.734745
iter 70 value 84.247864
iter 80 value 83.961790
iter 90 value 83.597918
iter 100 value 83.446436
final value 83.446436
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 105.395888
iter 10 value 94.486808
iter 20 value 92.171980
iter 30 value 87.586003
iter 40 value 86.696617
iter 50 value 85.987242
iter 60 value 85.655338
iter 70 value 85.532161
iter 80 value 84.112911
iter 90 value 83.292447
iter 100 value 83.086115
final value 83.086115
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 112.387905
iter 10 value 93.996791
iter 20 value 89.426466
iter 30 value 89.001445
iter 40 value 83.786279
iter 50 value 83.485435
iter 60 value 83.129209
iter 70 value 82.587735
iter 80 value 82.434123
iter 90 value 82.394069
iter 100 value 82.348588
final value 82.348588
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.285719
iter 10 value 94.521611
iter 20 value 91.268630
iter 30 value 89.287521
iter 40 value 87.046446
iter 50 value 86.163638
iter 60 value 85.584452
iter 70 value 85.080419
iter 80 value 85.065083
iter 90 value 84.185558
iter 100 value 83.525219
final value 83.525219
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.292795
iter 10 value 94.461827
iter 20 value 91.063121
iter 30 value 87.878167
iter 40 value 86.444420
iter 50 value 82.941757
iter 60 value 82.125783
iter 70 value 81.994539
iter 80 value 81.797539
iter 90 value 81.758422
iter 100 value 81.755187
final value 81.755187
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.159357
iter 10 value 93.915355
iter 20 value 88.257781
iter 30 value 84.364408
iter 40 value 83.525101
iter 50 value 83.008450
iter 60 value 82.652174
iter 70 value 82.526826
iter 80 value 82.501107
iter 90 value 82.467061
iter 100 value 82.285751
final value 82.285751
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 117.859580
iter 10 value 94.662752
iter 20 value 90.951469
iter 30 value 86.687669
iter 40 value 86.616591
iter 50 value 85.340540
iter 60 value 84.653648
iter 70 value 83.599806
iter 80 value 83.347133
iter 90 value 82.959504
iter 100 value 82.639559
final value 82.639559
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.323281
iter 10 value 99.743430
iter 20 value 97.574453
iter 30 value 94.547643
iter 40 value 94.255897
iter 50 value 85.618582
iter 60 value 83.792098
iter 70 value 83.461683
iter 80 value 83.301761
iter 90 value 82.814876
iter 100 value 82.631858
final value 82.631858
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.894492
iter 10 value 93.596282
iter 20 value 86.823970
iter 30 value 85.701146
iter 40 value 85.178628
iter 50 value 84.783219
iter 60 value 84.257984
iter 70 value 84.008020
iter 80 value 83.356010
iter 90 value 82.724592
iter 100 value 82.668511
final value 82.668511
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.850674
iter 10 value 94.923375
iter 20 value 92.402144
iter 30 value 88.435828
iter 40 value 85.833936
iter 50 value 83.943457
iter 60 value 83.073175
iter 70 value 82.613848
iter 80 value 82.513120
iter 90 value 82.227474
iter 100 value 82.112141
final value 82.112141
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 121.336421
iter 10 value 94.873100
iter 20 value 94.331815
iter 30 value 87.305572
iter 40 value 86.190584
iter 50 value 86.101006
iter 60 value 86.030301
iter 70 value 84.887276
iter 80 value 83.022221
iter 90 value 82.515613
iter 100 value 82.412833
final value 82.412833
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.947956
final value 94.485832
converged
Fitting Repeat 2
# weights: 103
initial value 101.250836
final value 94.048304
converged
Fitting Repeat 3
# weights: 103
initial value 95.218066
final value 94.486002
converged
Fitting Repeat 4
# weights: 103
initial value 111.659944
iter 10 value 94.485191
iter 20 value 93.785449
iter 30 value 93.277264
iter 40 value 86.561439
iter 50 value 85.988399
iter 60 value 85.988309
final value 85.988184
converged
Fitting Repeat 5
# weights: 103
initial value 96.434140
final value 94.485806
converged
Fitting Repeat 1
# weights: 305
initial value 98.063692
iter 10 value 94.489162
iter 20 value 94.460889
iter 30 value 94.354492
iter 30 value 94.354492
iter 30 value 94.354492
final value 94.354492
converged
Fitting Repeat 2
# weights: 305
initial value 100.119672
iter 10 value 94.489229
iter 20 value 92.496163
iter 30 value 86.640220
iter 30 value 86.640219
iter 30 value 86.640219
final value 86.640219
converged
Fitting Repeat 3
# weights: 305
initial value 122.477001
iter 10 value 94.359089
iter 20 value 94.355982
final value 94.355119
converged
Fitting Repeat 4
# weights: 305
initial value 102.555462
iter 10 value 94.489210
iter 20 value 94.484215
iter 30 value 93.561462
iter 40 value 90.181361
iter 50 value 87.752546
iter 60 value 87.749210
iter 70 value 85.041414
iter 80 value 84.997023
iter 90 value 84.996796
iter 100 value 84.996448
final value 84.996448
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.963330
iter 10 value 93.786362
iter 20 value 93.783571
iter 30 value 93.781655
iter 40 value 88.041399
iter 50 value 84.804418
iter 60 value 81.501915
iter 70 value 81.412014
iter 80 value 81.382407
iter 90 value 81.380988
iter 100 value 81.380767
final value 81.380767
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 123.611334
iter 10 value 94.362697
iter 20 value 94.322238
iter 30 value 88.941130
iter 40 value 88.556102
iter 50 value 88.523512
iter 60 value 87.211998
iter 70 value 87.134844
iter 80 value 85.992303
iter 90 value 85.463762
iter 100 value 85.422231
final value 85.422231
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 128.188784
iter 10 value 94.362624
iter 20 value 94.354783
iter 30 value 88.240514
iter 40 value 86.150486
iter 50 value 85.992164
iter 60 value 85.010361
iter 70 value 84.946666
iter 80 value 84.103905
iter 90 value 83.934068
iter 100 value 83.657835
final value 83.657835
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.167188
iter 10 value 94.491992
iter 20 value 94.389731
iter 30 value 86.532044
iter 40 value 84.253036
iter 50 value 84.076553
iter 60 value 83.438672
iter 70 value 83.437983
iter 80 value 82.854925
iter 90 value 82.713047
iter 100 value 82.697942
final value 82.697942
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.025831
iter 10 value 94.361967
iter 20 value 94.353595
iter 30 value 94.179145
iter 40 value 91.658415
iter 50 value 86.802887
iter 60 value 86.284128
iter 70 value 85.946393
iter 80 value 85.875928
iter 90 value 85.353259
iter 100 value 84.344162
final value 84.344162
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.764385
iter 10 value 91.698958
iter 20 value 86.766154
iter 30 value 86.688122
iter 40 value 86.684175
iter 50 value 86.680700
iter 60 value 85.836730
iter 70 value 85.817730
iter 80 value 85.815564
iter 90 value 85.656274
final value 85.654508
converged
Fitting Repeat 1
# weights: 103
initial value 96.284153
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.666173
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 105.809909
final value 94.354396
converged
Fitting Repeat 4
# weights: 103
initial value 118.636458
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 105.969472
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 105.274723
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 111.691118
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 102.888689
iter 10 value 94.290491
iter 20 value 83.262952
iter 30 value 83.240200
iter 40 value 83.239538
final value 83.239527
converged
Fitting Repeat 4
# weights: 305
initial value 105.116439
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 95.289349
iter 10 value 94.135765
final value 94.132578
converged
Fitting Repeat 1
# weights: 507
initial value 104.721554
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 109.597862
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 99.937972
iter 10 value 94.452050
iter 20 value 85.810036
iter 30 value 82.323212
iter 40 value 82.311723
final value 82.311690
converged
Fitting Repeat 4
# weights: 507
initial value 95.922320
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 139.909360
iter 10 value 94.919511
final value 94.354396
converged
Fitting Repeat 1
# weights: 103
initial value 114.537180
iter 10 value 94.406046
iter 20 value 86.314276
iter 30 value 85.323278
iter 40 value 84.100137
iter 50 value 83.866720
iter 60 value 83.119273
iter 70 value 83.072927
final value 83.072923
converged
Fitting Repeat 2
# weights: 103
initial value 96.737752
iter 10 value 94.368060
iter 20 value 91.984500
iter 30 value 90.418650
iter 40 value 87.770901
iter 50 value 83.374210
iter 60 value 80.683066
iter 70 value 79.504112
iter 80 value 79.119994
iter 90 value 78.968977
iter 100 value 78.876991
final value 78.876991
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.939850
iter 10 value 94.478913
iter 20 value 88.434350
iter 30 value 87.607356
iter 40 value 85.685861
iter 50 value 82.423445
iter 60 value 81.892098
iter 70 value 81.606069
iter 80 value 81.582514
final value 81.582489
converged
Fitting Repeat 4
# weights: 103
initial value 103.325751
iter 10 value 94.488251
iter 20 value 94.401224
iter 30 value 84.477180
iter 40 value 83.540575
iter 50 value 82.893703
iter 60 value 81.798017
iter 70 value 81.597106
final value 81.582546
converged
Fitting Repeat 5
# weights: 103
initial value 96.527801
iter 10 value 93.321074
iter 20 value 83.596962
iter 30 value 82.626961
iter 40 value 82.404552
iter 50 value 82.341770
iter 60 value 81.836100
iter 70 value 81.327156
final value 81.313727
converged
Fitting Repeat 1
# weights: 305
initial value 109.009766
iter 10 value 94.260305
iter 20 value 86.151724
iter 30 value 82.227096
iter 40 value 81.606186
iter 50 value 81.381001
iter 60 value 80.681575
iter 70 value 79.748969
iter 80 value 78.113733
iter 90 value 77.787286
iter 100 value 77.725665
final value 77.725665
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 119.327769
iter 10 value 87.716654
iter 20 value 85.458762
iter 30 value 84.635988
iter 40 value 82.068084
iter 50 value 81.744379
iter 60 value 81.465520
iter 70 value 78.870817
iter 80 value 78.048275
iter 90 value 77.452946
iter 100 value 77.064477
final value 77.064477
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.905855
iter 10 value 93.351719
iter 20 value 86.432441
iter 30 value 83.578180
iter 40 value 82.762315
iter 50 value 81.211512
iter 60 value 81.166792
iter 70 value 80.614234
iter 80 value 77.884719
iter 90 value 77.579449
iter 100 value 77.436217
final value 77.436217
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.600958
iter 10 value 86.834487
iter 20 value 79.991733
iter 30 value 78.455834
iter 40 value 77.849172
iter 50 value 77.287007
iter 60 value 76.659352
iter 70 value 76.612136
iter 80 value 76.554764
iter 90 value 76.529603
iter 100 value 76.500298
final value 76.500298
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 113.836639
iter 10 value 94.202154
iter 20 value 88.811329
iter 30 value 85.209012
iter 40 value 82.839026
iter 50 value 80.015338
iter 60 value 79.474501
iter 70 value 79.221143
iter 80 value 78.360234
iter 90 value 77.606424
iter 100 value 77.534002
final value 77.534002
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 101.221329
iter 10 value 92.689251
iter 20 value 83.693278
iter 30 value 83.503325
iter 40 value 83.264579
iter 50 value 80.032348
iter 60 value 78.372825
iter 70 value 77.734081
iter 80 value 77.337666
iter 90 value 77.236725
iter 100 value 76.736000
final value 76.736000
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.451065
iter 10 value 87.844157
iter 20 value 85.033312
iter 30 value 85.002695
iter 40 value 84.529784
iter 50 value 82.023667
iter 60 value 80.677660
iter 70 value 80.195945
iter 80 value 79.499895
iter 90 value 79.121943
iter 100 value 78.798763
final value 78.798763
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 119.514794
iter 10 value 94.463088
iter 20 value 86.745211
iter 30 value 82.583371
iter 40 value 80.809408
iter 50 value 79.248907
iter 60 value 78.526199
iter 70 value 78.269293
iter 80 value 77.900599
iter 90 value 77.572807
iter 100 value 77.487751
final value 77.487751
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 139.582360
iter 10 value 94.544118
iter 20 value 87.727477
iter 30 value 84.363589
iter 40 value 82.528569
iter 50 value 81.652347
iter 60 value 81.342012
iter 70 value 79.987810
iter 80 value 79.435765
iter 90 value 78.530135
iter 100 value 77.676461
final value 77.676461
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.248784
iter 10 value 96.425834
iter 20 value 87.884402
iter 30 value 83.531630
iter 40 value 79.686704
iter 50 value 78.854668
iter 60 value 78.363942
iter 70 value 78.158877
iter 80 value 77.246786
iter 90 value 76.816229
iter 100 value 76.734775
final value 76.734775
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.984526
final value 94.485871
converged
Fitting Repeat 2
# weights: 103
initial value 107.342799
final value 94.485927
converged
Fitting Repeat 3
# weights: 103
initial value 98.778181
final value 94.485759
converged
Fitting Repeat 4
# weights: 103
initial value 95.988401
final value 94.485791
converged
Fitting Repeat 5
# weights: 103
initial value 107.915866
final value 94.485903
converged
Fitting Repeat 1
# weights: 305
initial value 112.977614
iter 10 value 94.491750
iter 20 value 94.486438
final value 94.486419
converged
Fitting Repeat 2
# weights: 305
initial value 100.596929
iter 10 value 94.488748
iter 20 value 94.088528
iter 30 value 83.905687
iter 40 value 83.899618
iter 50 value 83.898366
iter 60 value 83.897235
iter 70 value 83.895258
iter 80 value 83.885261
iter 90 value 83.882695
iter 100 value 83.258103
final value 83.258103
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.175448
iter 10 value 94.359492
iter 20 value 94.354923
final value 94.354522
converged
Fitting Repeat 4
# weights: 305
initial value 96.211066
iter 10 value 94.151886
iter 20 value 94.140175
iter 30 value 94.135625
iter 40 value 94.134866
iter 50 value 94.133025
final value 94.133020
converged
Fitting Repeat 5
# weights: 305
initial value 100.580083
iter 10 value 93.115712
iter 20 value 93.055083
iter 30 value 81.240341
iter 40 value 80.273309
iter 50 value 80.262499
iter 60 value 80.262126
iter 70 value 80.249146
iter 80 value 78.598921
iter 90 value 77.323761
iter 100 value 77.309083
final value 77.309083
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 96.005057
iter 10 value 94.362811
iter 20 value 94.356151
final value 94.355363
converged
Fitting Repeat 2
# weights: 507
initial value 107.381569
iter 10 value 94.491678
iter 20 value 92.787407
iter 30 value 92.453651
iter 40 value 91.318519
iter 50 value 91.271748
iter 60 value 91.270046
final value 91.270028
converged
Fitting Repeat 3
# weights: 507
initial value 99.263834
iter 10 value 93.405798
iter 20 value 86.230995
iter 30 value 82.433683
iter 40 value 82.335778
iter 50 value 82.297761
iter 60 value 82.296022
iter 70 value 82.295876
iter 80 value 82.126562
iter 90 value 81.605344
iter 100 value 81.547412
final value 81.547412
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 94.720047
iter 10 value 94.488848
iter 20 value 94.075391
iter 30 value 93.016238
iter 40 value 93.015464
iter 50 value 93.015242
iter 60 value 93.015198
final value 93.015122
converged
Fitting Repeat 5
# weights: 507
initial value 104.829564
iter 10 value 94.167739
iter 20 value 94.146316
iter 30 value 94.144940
iter 40 value 93.952392
iter 50 value 83.518192
iter 60 value 83.243137
iter 70 value 83.237469
iter 80 value 83.217102
iter 90 value 82.881937
iter 100 value 79.162045
final value 79.162045
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.080473
final value 94.043243
converged
Fitting Repeat 2
# weights: 103
initial value 100.147837
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 101.300570
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 103.370123
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 98.570054
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 102.480216
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 99.749563
iter 10 value 93.284198
final value 93.279878
converged
Fitting Repeat 3
# weights: 305
initial value 102.075936
final value 94.043243
converged
Fitting Repeat 4
# weights: 305
initial value 98.289539
iter 10 value 93.328420
final value 93.328261
converged
Fitting Repeat 5
# weights: 305
initial value 95.233444
final value 94.042012
converged
Fitting Repeat 1
# weights: 507
initial value 100.196806
final value 94.043243
converged
Fitting Repeat 2
# weights: 507
initial value 96.721789
final value 94.011428
converged
Fitting Repeat 3
# weights: 507
initial value 117.831526
final value 94.043243
converged
Fitting Repeat 4
# weights: 507
initial value 117.288884
iter 10 value 89.993719
iter 20 value 86.344482
iter 20 value 86.344482
iter 20 value 86.344482
final value 86.344482
converged
Fitting Repeat 5
# weights: 507
initial value 116.638513
iter 10 value 93.328261
iter 10 value 93.328261
iter 10 value 93.328261
final value 93.328261
converged
Fitting Repeat 1
# weights: 103
initial value 100.184550
iter 10 value 94.045309
iter 20 value 84.113387
iter 30 value 83.263567
iter 40 value 83.011913
iter 50 value 82.818681
iter 60 value 82.675928
iter 70 value 82.624499
final value 82.622871
converged
Fitting Repeat 2
# weights: 103
initial value 106.298596
iter 10 value 94.062553
iter 20 value 93.591757
iter 30 value 92.770503
iter 40 value 89.886458
iter 50 value 83.954446
iter 60 value 82.404655
iter 70 value 82.294627
iter 80 value 82.160255
iter 90 value 81.221471
iter 100 value 80.949295
final value 80.949295
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 95.609341
iter 10 value 94.052364
iter 20 value 93.870641
iter 30 value 90.604189
iter 40 value 88.729432
iter 50 value 85.536113
iter 60 value 85.017264
iter 70 value 82.285062
iter 80 value 81.553858
iter 90 value 81.505335
iter 100 value 81.225388
final value 81.225388
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 101.591333
iter 10 value 94.057324
iter 20 value 94.021558
iter 30 value 93.441791
iter 40 value 93.197088
iter 50 value 93.107405
iter 60 value 85.384492
iter 70 value 83.960323
iter 80 value 83.261756
iter 90 value 83.121561
iter 100 value 82.276610
final value 82.276610
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 105.169442
iter 10 value 94.059603
iter 20 value 94.035833
iter 30 value 93.685828
iter 40 value 89.785022
iter 50 value 84.696543
iter 60 value 83.123700
iter 70 value 83.053881
iter 80 value 82.638327
iter 90 value 82.622881
final value 82.622875
converged
Fitting Repeat 1
# weights: 305
initial value 98.983926
iter 10 value 94.015124
iter 20 value 93.744201
iter 30 value 87.476193
iter 40 value 86.022178
iter 50 value 85.579704
iter 60 value 83.206069
iter 70 value 80.880291
iter 80 value 80.388931
iter 90 value 80.182259
iter 100 value 80.040814
final value 80.040814
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 108.458646
iter 10 value 93.915447
iter 20 value 93.313243
iter 30 value 92.985146
iter 40 value 84.818051
iter 50 value 83.885146
iter 60 value 83.447988
iter 70 value 81.504522
iter 80 value 81.064355
iter 90 value 80.149719
iter 100 value 80.039459
final value 80.039459
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.073530
iter 10 value 91.131574
iter 20 value 87.044481
iter 30 value 84.840353
iter 40 value 83.976144
iter 50 value 82.594042
iter 60 value 82.294779
iter 70 value 82.001761
iter 80 value 81.630079
iter 90 value 81.518318
iter 100 value 81.516866
final value 81.516866
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 114.762860
iter 10 value 94.329118
iter 20 value 92.309204
iter 30 value 90.357273
iter 40 value 87.526992
iter 50 value 86.133226
iter 60 value 85.279752
iter 70 value 83.585101
iter 80 value 81.214445
iter 90 value 79.988285
iter 100 value 79.414045
final value 79.414045
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.759233
iter 10 value 93.681807
iter 20 value 87.191303
iter 30 value 85.728608
iter 40 value 84.241218
iter 50 value 82.209634
iter 60 value 81.936661
iter 70 value 81.622965
iter 80 value 81.292721
iter 90 value 81.038310
iter 100 value 80.478547
final value 80.478547
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.322655
iter 10 value 96.253980
iter 20 value 94.106487
iter 30 value 94.042794
iter 40 value 92.509935
iter 50 value 87.678024
iter 60 value 86.254297
iter 70 value 86.206361
iter 80 value 85.922111
iter 90 value 85.741465
iter 100 value 85.038043
final value 85.038043
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.210586
iter 10 value 94.730973
iter 20 value 93.628902
iter 30 value 87.252224
iter 40 value 86.202406
iter 50 value 85.496147
iter 60 value 84.414020
iter 70 value 81.496227
iter 80 value 80.682967
iter 90 value 80.452424
iter 100 value 79.959245
final value 79.959245
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 140.695295
iter 10 value 94.186715
iter 20 value 89.567612
iter 30 value 84.621554
iter 40 value 83.490090
iter 50 value 81.618740
iter 60 value 81.019418
iter 70 value 80.294637
iter 80 value 80.081141
iter 90 value 79.893534
iter 100 value 79.811675
final value 79.811675
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.887408
iter 10 value 96.557235
iter 20 value 95.431849
iter 30 value 89.846345
iter 40 value 85.850554
iter 50 value 85.199686
iter 60 value 84.727038
iter 70 value 82.108837
iter 80 value 81.092150
iter 90 value 80.692962
iter 100 value 80.639094
final value 80.639094
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 114.587250
iter 10 value 94.075179
iter 20 value 93.850030
iter 30 value 90.702887
iter 40 value 85.297093
iter 50 value 83.328338
iter 60 value 82.754723
iter 70 value 81.003274
iter 80 value 80.691282
iter 90 value 80.439715
iter 100 value 80.114418
final value 80.114418
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.192156
final value 94.054348
converged
Fitting Repeat 2
# weights: 103
initial value 101.243524
final value 94.054490
converged
Fitting Repeat 3
# weights: 103
initial value 100.012921
final value 94.054635
converged
Fitting Repeat 4
# weights: 103
initial value 94.875402
final value 94.054761
converged
Fitting Repeat 5
# weights: 103
initial value 101.385524
final value 94.054898
converged
Fitting Repeat 1
# weights: 305
initial value 101.915234
iter 10 value 94.057834
iter 20 value 94.053354
iter 30 value 93.603919
iter 40 value 93.387104
iter 50 value 93.256898
iter 60 value 92.933801
iter 70 value 89.917119
iter 80 value 89.369984
iter 90 value 88.676917
iter 100 value 88.199464
final value 88.199464
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.396266
iter 10 value 94.057581
iter 20 value 94.052903
iter 30 value 94.043362
final value 94.043275
converged
Fitting Repeat 3
# weights: 305
initial value 96.025384
iter 10 value 92.055944
iter 20 value 82.997562
iter 30 value 82.981153
iter 40 value 82.979187
iter 50 value 82.977187
iter 60 value 81.567361
iter 70 value 81.162169
iter 80 value 81.161317
iter 90 value 80.686902
iter 100 value 79.279017
final value 79.279017
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.954029
iter 10 value 94.054286
iter 20 value 94.052970
iter 30 value 93.488174
iter 40 value 93.283940
iter 50 value 86.809836
iter 60 value 84.022651
iter 70 value 82.982907
final value 82.972160
converged
Fitting Repeat 5
# weights: 305
initial value 104.831605
iter 10 value 93.802510
iter 20 value 93.684479
iter 30 value 93.640446
iter 40 value 93.621122
iter 50 value 87.777649
iter 60 value 85.457654
iter 70 value 82.953704
iter 80 value 81.350696
iter 90 value 81.299849
iter 100 value 81.150872
final value 81.150872
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 95.178062
iter 10 value 94.060096
iter 20 value 85.370417
iter 30 value 85.088175
iter 40 value 84.981649
iter 50 value 84.522611
iter 60 value 82.891515
iter 70 value 82.873576
iter 80 value 82.434892
iter 90 value 82.062994
iter 100 value 82.048528
final value 82.048528
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 96.113813
iter 10 value 93.253789
iter 20 value 93.005312
iter 30 value 92.757341
iter 40 value 92.754779
iter 50 value 92.754292
iter 60 value 91.364766
iter 70 value 91.064949
iter 80 value 91.064413
iter 90 value 90.926300
iter 100 value 90.599408
final value 90.599408
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 101.512627
iter 10 value 94.025322
iter 20 value 94.024610
iter 30 value 94.022028
iter 40 value 87.865596
iter 50 value 84.679572
iter 60 value 82.646582
iter 70 value 81.180236
iter 80 value 80.349575
iter 90 value 80.008344
iter 100 value 79.867417
final value 79.867417
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 96.141585
iter 10 value 94.060822
iter 20 value 94.022091
iter 30 value 92.242712
iter 40 value 91.690124
iter 50 value 91.688706
iter 60 value 87.275644
iter 70 value 87.218430
iter 80 value 86.591765
iter 90 value 86.122331
iter 100 value 85.868614
final value 85.868614
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 100.987941
iter 10 value 94.061412
iter 20 value 93.913921
iter 30 value 87.451214
iter 40 value 84.936297
final value 84.934535
converged
Fitting Repeat 1
# weights: 103
initial value 100.125736
iter 10 value 93.659814
final value 93.578672
converged
Fitting Repeat 2
# weights: 103
initial value 94.396360
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 103.812929
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 104.953505
iter 10 value 93.533314
iter 20 value 93.421827
final value 93.421697
converged
Fitting Repeat 5
# weights: 103
initial value 96.656995
final value 94.008696
converged
Fitting Repeat 1
# weights: 305
initial value 104.707056
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 108.609772
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 95.139034
final value 94.008696
converged
Fitting Repeat 4
# weights: 305
initial value 115.974931
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 97.112821
iter 10 value 93.266611
final value 93.224692
converged
Fitting Repeat 1
# weights: 507
initial value 96.383047
final value 93.636782
converged
Fitting Repeat 2
# weights: 507
initial value 97.018806
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 132.853864
iter 10 value 94.008696
iter 10 value 94.008696
iter 10 value 94.008696
final value 94.008696
converged
Fitting Repeat 4
# weights: 507
initial value 116.407602
final value 94.000449
converged
Fitting Repeat 5
# weights: 507
initial value 102.772864
final value 94.008696
converged
Fitting Repeat 1
# weights: 103
initial value 100.787608
iter 10 value 93.981804
iter 20 value 83.911012
iter 30 value 83.234998
iter 40 value 83.156997
iter 50 value 81.831880
iter 60 value 80.733983
iter 70 value 80.466139
iter 80 value 80.371115
iter 90 value 80.308344
final value 80.305501
converged
Fitting Repeat 2
# weights: 103
initial value 111.764999
iter 10 value 94.055070
iter 20 value 84.884025
iter 30 value 84.016772
iter 40 value 83.845646
iter 50 value 82.849247
iter 60 value 82.251095
final value 82.250103
converged
Fitting Repeat 3
# weights: 103
initial value 99.587829
iter 10 value 94.054980
iter 20 value 93.360721
iter 30 value 88.593746
iter 40 value 84.286007
iter 50 value 83.497995
iter 60 value 82.791017
iter 70 value 82.319859
iter 80 value 82.252746
iter 90 value 82.250103
iter 90 value 82.250102
iter 90 value 82.250102
final value 82.250102
converged
Fitting Repeat 4
# weights: 103
initial value 97.167458
iter 10 value 94.058463
iter 20 value 94.054809
iter 30 value 89.225819
iter 40 value 85.960579
iter 50 value 83.128966
iter 60 value 82.354099
iter 70 value 82.255480
iter 80 value 82.227682
final value 82.227278
converged
Fitting Repeat 5
# weights: 103
initial value 109.044452
iter 10 value 93.983237
iter 20 value 87.940890
iter 30 value 83.902463
iter 40 value 83.051946
iter 50 value 81.738290
iter 60 value 80.518322
iter 70 value 80.454303
iter 80 value 80.432329
iter 90 value 80.336256
iter 100 value 80.305504
final value 80.305504
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 117.101687
iter 10 value 92.567297
iter 20 value 83.972348
iter 30 value 83.890470
iter 40 value 83.274258
iter 50 value 81.841439
iter 60 value 80.703017
iter 70 value 80.352407
iter 80 value 80.199172
iter 90 value 80.130797
iter 100 value 80.093180
final value 80.093180
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.162274
iter 10 value 92.134484
iter 20 value 85.581500
iter 30 value 85.070318
iter 40 value 83.028446
iter 50 value 82.297675
iter 60 value 81.340023
iter 70 value 80.801583
iter 80 value 80.109468
iter 90 value 79.916850
iter 100 value 79.549005
final value 79.549005
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.048818
iter 10 value 94.164942
iter 20 value 94.069891
iter 30 value 93.960063
iter 40 value 91.346728
iter 50 value 84.415193
iter 60 value 82.471562
iter 70 value 81.894684
iter 80 value 79.895978
iter 90 value 79.363527
iter 100 value 79.120427
final value 79.120427
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.485079
iter 10 value 92.673367
iter 20 value 87.679534
iter 30 value 85.646382
iter 40 value 82.897931
iter 50 value 81.019671
iter 60 value 79.831575
iter 70 value 79.676670
iter 80 value 79.647726
iter 90 value 79.616209
iter 100 value 79.575549
final value 79.575549
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 116.719110
iter 10 value 93.958422
iter 20 value 87.056299
iter 30 value 86.375803
iter 40 value 84.318483
iter 50 value 82.318373
iter 60 value 82.155882
iter 70 value 82.080911
iter 80 value 81.646879
iter 90 value 81.309704
iter 100 value 81.210206
final value 81.210206
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 120.116483
iter 10 value 95.947777
iter 20 value 93.789226
iter 30 value 83.948626
iter 40 value 80.765479
iter 50 value 79.892643
iter 60 value 79.471519
iter 70 value 78.900795
iter 80 value 78.728647
iter 90 value 78.486775
iter 100 value 78.434675
final value 78.434675
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 119.691812
iter 10 value 93.979239
iter 20 value 87.220539
iter 30 value 84.712964
iter 40 value 82.866428
iter 50 value 82.581171
iter 60 value 81.775353
iter 70 value 81.401301
iter 80 value 81.225762
iter 90 value 81.192217
iter 100 value 81.022239
final value 81.022239
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 150.505091
iter 10 value 95.063289
iter 20 value 84.244417
iter 30 value 82.370331
iter 40 value 82.169987
iter 50 value 80.864771
iter 60 value 80.537264
iter 70 value 80.366112
iter 80 value 80.224056
iter 90 value 79.506108
iter 100 value 79.289391
final value 79.289391
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 119.038966
iter 10 value 89.899336
iter 20 value 84.312464
iter 30 value 83.276599
iter 40 value 82.645596
iter 50 value 82.014245
iter 60 value 81.870096
iter 70 value 81.628549
iter 80 value 80.225986
iter 90 value 79.660469
iter 100 value 79.309311
final value 79.309311
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 112.235632
iter 10 value 93.767177
iter 20 value 93.626078
iter 30 value 91.541381
iter 40 value 87.089919
iter 50 value 85.502093
iter 60 value 82.672552
iter 70 value 81.165607
iter 80 value 80.263044
iter 90 value 79.374047
iter 100 value 79.106736
final value 79.106736
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.195294
iter 10 value 94.054548
iter 20 value 94.051160
iter 30 value 93.518175
final value 93.518148
converged
Fitting Repeat 2
# weights: 103
initial value 100.863602
final value 94.054516
converged
Fitting Repeat 3
# weights: 103
initial value 97.827293
final value 94.054613
converged
Fitting Repeat 4
# weights: 103
initial value 99.658108
final value 94.054741
converged
Fitting Repeat 5
# weights: 103
initial value 105.615729
final value 94.054648
converged
Fitting Repeat 1
# weights: 305
initial value 117.445715
iter 10 value 94.059562
iter 20 value 94.054721
iter 30 value 84.376607
iter 40 value 83.300999
iter 50 value 83.096898
final value 83.096564
converged
Fitting Repeat 2
# weights: 305
initial value 98.538674
iter 10 value 94.057755
iter 20 value 94.052974
iter 30 value 93.978476
iter 40 value 93.519861
iter 50 value 93.518077
iter 50 value 93.518077
iter 50 value 93.518077
final value 93.518077
converged
Fitting Repeat 3
# weights: 305
initial value 109.167275
iter 10 value 93.677364
iter 20 value 92.074385
iter 30 value 92.036208
iter 40 value 91.752090
iter 50 value 91.736817
final value 91.735281
converged
Fitting Repeat 4
# weights: 305
initial value 113.943235
iter 10 value 94.057868
iter 20 value 93.998395
iter 30 value 83.301422
final value 83.296979
converged
Fitting Repeat 5
# weights: 305
initial value 94.321148
iter 10 value 93.877608
iter 20 value 93.875173
iter 30 value 93.869776
iter 40 value 93.868873
iter 50 value 88.040200
iter 60 value 88.008537
iter 70 value 84.672352
iter 80 value 84.590473
iter 90 value 84.570269
iter 100 value 84.563494
final value 84.563494
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 114.346401
iter 10 value 94.059722
iter 20 value 94.012318
iter 30 value 93.536940
iter 40 value 91.740018
iter 50 value 82.176675
iter 60 value 81.471106
final value 81.460605
converged
Fitting Repeat 2
# weights: 507
initial value 116.819799
iter 10 value 94.061820
iter 20 value 94.053094
iter 30 value 83.734713
iter 40 value 80.995136
iter 50 value 80.898785
iter 60 value 80.892781
iter 70 value 80.885239
iter 80 value 80.878393
iter 90 value 80.855204
iter 100 value 80.718773
final value 80.718773
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 98.795193
iter 10 value 94.056976
final value 94.053572
converged
Fitting Repeat 4
# weights: 507
initial value 98.626642
iter 10 value 87.247042
iter 20 value 87.241960
iter 30 value 87.163475
iter 40 value 85.153335
iter 50 value 85.088006
iter 60 value 85.087626
iter 70 value 83.035822
iter 80 value 82.874933
iter 90 value 80.519546
iter 100 value 79.280377
final value 79.280377
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 98.841760
iter 10 value 87.156820
iter 20 value 86.326933
iter 30 value 84.330487
iter 40 value 82.642620
iter 50 value 80.777651
iter 60 value 80.338868
final value 80.332580
converged
Fitting Repeat 1
# weights: 103
initial value 108.765666
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.795300
iter 10 value 94.026546
final value 94.026542
converged
Fitting Repeat 3
# weights: 103
initial value 99.156384
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 110.411413
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 100.684647
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 100.066495
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 123.025427
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 121.550549
final value 94.026542
converged
Fitting Repeat 4
# weights: 305
initial value 98.886285
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 96.721166
iter 10 value 94.026556
final value 94.026542
converged
Fitting Repeat 1
# weights: 507
initial value 117.154614
iter 10 value 93.581769
final value 93.581395
converged
Fitting Repeat 2
# weights: 507
initial value 95.595580
final value 93.047059
converged
Fitting Repeat 3
# weights: 507
initial value 104.237453
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 99.961758
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 99.732247
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 99.702450
iter 10 value 93.508160
iter 20 value 89.296563
iter 30 value 87.082426
iter 40 value 85.418110
iter 50 value 84.544107
iter 60 value 84.342139
iter 70 value 84.262746
final value 84.248079
converged
Fitting Repeat 2
# weights: 103
initial value 98.467294
iter 10 value 94.458760
iter 20 value 93.998118
iter 30 value 93.887435
iter 40 value 88.049697
iter 50 value 86.833247
iter 60 value 85.986005
iter 70 value 84.438409
iter 80 value 84.179911
final value 84.178164
converged
Fitting Repeat 3
# weights: 103
initial value 105.191652
iter 10 value 94.444825
iter 20 value 90.911862
iter 30 value 88.245960
iter 40 value 87.991098
iter 50 value 87.768987
iter 60 value 87.523813
final value 87.523170
converged
Fitting Repeat 4
# weights: 103
initial value 96.247611
iter 10 value 94.435814
iter 20 value 93.903437
iter 30 value 93.741409
iter 40 value 87.504767
iter 50 value 87.031028
iter 60 value 85.605472
iter 70 value 85.264566
final value 85.260084
converged
Fitting Repeat 5
# weights: 103
initial value 98.820068
iter 10 value 94.549704
iter 20 value 91.198013
iter 30 value 87.500096
iter 40 value 87.230626
iter 50 value 86.708456
iter 60 value 85.584727
iter 70 value 85.319215
iter 80 value 85.260127
final value 85.260084
converged
Fitting Repeat 1
# weights: 305
initial value 112.167305
iter 10 value 94.389980
iter 20 value 93.701304
iter 30 value 88.047319
iter 40 value 87.296352
iter 50 value 85.387944
iter 60 value 84.989485
iter 70 value 84.434704
iter 80 value 84.320108
iter 90 value 84.132676
iter 100 value 83.586520
final value 83.586520
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.687578
iter 10 value 93.945915
iter 20 value 92.284184
iter 30 value 87.233175
iter 40 value 86.797311
iter 50 value 85.871227
iter 60 value 84.435305
iter 70 value 84.215071
iter 80 value 84.070827
iter 90 value 83.946007
iter 100 value 83.796739
final value 83.796739
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.474218
iter 10 value 94.604484
iter 20 value 94.138714
iter 30 value 94.115128
iter 40 value 93.841517
iter 50 value 91.300094
iter 60 value 90.698407
iter 70 value 89.894732
iter 80 value 86.585030
iter 90 value 84.760655
iter 100 value 84.007121
final value 84.007121
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.937311
iter 10 value 94.903201
iter 20 value 94.323426
iter 30 value 94.090521
iter 40 value 89.177013
iter 50 value 88.054563
iter 60 value 87.582940
iter 70 value 86.752429
iter 80 value 85.380483
iter 90 value 84.128268
iter 100 value 84.012410
final value 84.012410
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.635324
iter 10 value 94.779152
iter 20 value 92.068938
iter 30 value 89.010087
iter 40 value 88.591917
iter 50 value 87.531896
iter 60 value 87.442129
iter 70 value 87.379027
iter 80 value 86.595519
iter 90 value 85.322936
iter 100 value 84.364011
final value 84.364011
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 131.205576
iter 10 value 94.643073
iter 20 value 94.034342
iter 30 value 88.716284
iter 40 value 87.706223
iter 50 value 86.643354
iter 60 value 84.549116
iter 70 value 84.285286
iter 80 value 84.007638
iter 90 value 83.611419
iter 100 value 83.505023
final value 83.505023
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 120.900191
iter 10 value 94.440157
iter 20 value 91.195355
iter 30 value 87.526683
iter 40 value 86.585270
iter 50 value 85.756197
iter 60 value 85.118659
iter 70 value 84.971080
iter 80 value 84.639190
iter 90 value 83.945632
iter 100 value 83.808752
final value 83.808752
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.276452
iter 10 value 95.363023
iter 20 value 93.188416
iter 30 value 87.234840
iter 40 value 85.671295
iter 50 value 84.710326
iter 60 value 84.437013
iter 70 value 84.190660
iter 80 value 84.032901
iter 90 value 83.963477
iter 100 value 83.892847
final value 83.892847
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.432901
iter 10 value 97.350423
iter 20 value 91.927879
iter 30 value 88.937165
iter 40 value 87.432188
iter 50 value 87.174784
iter 60 value 87.121539
iter 70 value 86.972015
iter 80 value 85.851672
iter 90 value 84.759849
iter 100 value 84.107530
final value 84.107530
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.657921
iter 10 value 92.166166
iter 20 value 87.860570
iter 30 value 87.197539
iter 40 value 86.474871
iter 50 value 85.834236
iter 60 value 85.072138
iter 70 value 84.252824
iter 80 value 83.888501
iter 90 value 83.692679
iter 100 value 83.531349
final value 83.531349
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.968992
final value 94.486072
converged
Fitting Repeat 2
# weights: 103
initial value 99.820017
final value 94.485915
converged
Fitting Repeat 3
# weights: 103
initial value 106.621068
final value 94.485623
converged
Fitting Repeat 4
# weights: 103
initial value 95.283090
final value 94.485705
converged
Fitting Repeat 5
# weights: 103
initial value 97.669779
iter 10 value 94.485807
iter 20 value 94.470027
iter 30 value 87.391099
final value 87.334264
converged
Fitting Repeat 1
# weights: 305
initial value 111.678488
iter 10 value 94.489273
iter 20 value 94.480400
iter 30 value 93.980294
final value 93.976431
converged
Fitting Repeat 2
# weights: 305
initial value 102.348793
iter 10 value 94.489334
iter 20 value 94.484255
iter 30 value 93.991056
final value 93.976414
converged
Fitting Repeat 3
# weights: 305
initial value 101.744748
iter 10 value 94.488562
iter 20 value 93.680914
iter 30 value 93.152846
iter 40 value 93.150120
iter 50 value 93.147535
iter 60 value 92.729153
iter 70 value 92.564043
iter 80 value 92.549464
iter 90 value 91.698122
iter 100 value 91.019392
final value 91.019392
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.740138
iter 10 value 93.551793
iter 20 value 93.548738
iter 30 value 92.093761
iter 40 value 89.060124
iter 50 value 88.987231
iter 60 value 88.258619
iter 70 value 86.552009
iter 80 value 84.493883
iter 90 value 84.390264
iter 100 value 84.192128
final value 84.192128
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 96.928505
iter 10 value 88.800437
iter 20 value 88.760028
iter 30 value 88.633873
iter 40 value 88.630985
final value 88.630916
converged
Fitting Repeat 1
# weights: 507
initial value 95.727280
iter 10 value 94.492202
iter 20 value 94.455388
iter 30 value 89.752974
iter 40 value 89.398690
iter 50 value 87.256426
iter 60 value 87.112802
iter 70 value 86.911162
iter 80 value 86.810239
iter 90 value 86.807585
iter 100 value 86.804837
final value 86.804837
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 95.080698
iter 10 value 94.034593
iter 20 value 94.029099
iter 30 value 91.529271
iter 40 value 88.384036
iter 50 value 88.223622
iter 60 value 88.218270
iter 70 value 88.217725
iter 80 value 88.215816
iter 90 value 88.048997
iter 100 value 86.687383
final value 86.687383
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 112.733246
iter 10 value 94.491951
iter 20 value 94.478162
iter 30 value 94.028570
iter 40 value 94.028281
final value 94.028120
converged
Fitting Repeat 4
# weights: 507
initial value 96.497646
iter 10 value 94.490605
iter 20 value 94.434586
iter 30 value 88.654453
iter 40 value 88.014908
iter 50 value 86.669575
iter 60 value 85.640421
iter 70 value 85.617880
iter 80 value 85.617466
iter 90 value 84.781885
iter 100 value 84.508037
final value 84.508037
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 98.090389
iter 10 value 94.457249
iter 20 value 94.431853
iter 30 value 92.117451
iter 40 value 86.506017
iter 50 value 85.799490
iter 60 value 85.610781
iter 70 value 83.393069
iter 80 value 83.100700
iter 90 value 83.099491
iter 100 value 82.920230
final value 82.920230
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 135.737373
iter 10 value 117.612927
iter 20 value 108.693033
iter 30 value 103.776189
iter 40 value 102.998839
iter 50 value 101.981664
iter 60 value 101.844239
iter 70 value 101.676279
iter 80 value 101.466168
iter 90 value 101.175813
iter 100 value 100.954722
final value 100.954722
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 123.463415
iter 10 value 117.936835
iter 20 value 116.872980
iter 30 value 112.742371
iter 40 value 112.322616
iter 50 value 108.615074
iter 60 value 107.270997
iter 70 value 106.057797
iter 80 value 105.649325
iter 90 value 105.233993
iter 100 value 104.656722
final value 104.656722
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 142.491803
iter 10 value 117.689344
iter 20 value 110.377908
iter 30 value 109.156429
iter 40 value 108.502449
iter 50 value 106.384254
iter 60 value 105.147365
iter 70 value 105.040680
iter 80 value 104.770022
iter 90 value 102.636010
iter 100 value 101.103957
final value 101.103957
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 141.266980
iter 10 value 118.216770
iter 20 value 110.096772
iter 30 value 104.397938
iter 40 value 103.096532
iter 50 value 102.472685
iter 60 value 102.325791
iter 70 value 102.315354
iter 80 value 102.117057
iter 90 value 102.112619
iter 100 value 102.106831
final value 102.106831
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 127.743434
iter 10 value 117.927768
iter 20 value 116.983318
iter 30 value 109.549819
iter 40 value 108.241325
iter 50 value 105.193554
iter 60 value 104.952790
iter 70 value 104.812673
iter 80 value 104.662131
iter 90 value 104.007151
iter 100 value 102.398940
final value 102.398940
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Wed Apr 17 16:37:24 2024
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
45.834 1.193 67.807
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 53.491 | 2.132 | 55.901 | |
| FreqInteractors | 0.271 | 0.012 | 0.294 | |
| calculateAAC | 0.052 | 0.007 | 0.060 | |
| calculateAutocor | 0.410 | 0.057 | 0.471 | |
| calculateCTDC | 0.093 | 0.006 | 0.099 | |
| calculateCTDD | 0.591 | 0.030 | 0.621 | |
| calculateCTDT | 0.252 | 0.016 | 0.268 | |
| calculateCTriad | 0.430 | 0.028 | 0.459 | |
| calculateDC | 0.095 | 0.012 | 0.106 | |
| calculateF | 0.282 | 0.012 | 0.295 | |
| calculateKSAAP | 0.097 | 0.010 | 0.106 | |
| calculateQD_Sm | 1.937 | 0.147 | 2.086 | |
| calculateTC | 1.688 | 0.160 | 1.850 | |
| calculateTC_Sm | 0.322 | 0.029 | 0.350 | |
| corr_plot | 51.751 | 2.440 | 54.534 | |
| enrichfindP | 0.513 | 0.080 | 28.657 | |
| enrichfind_hp | 0.071 | 0.014 | 0.952 | |
| enrichplot | 0.371 | 0.009 | 0.379 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.091 | 0.013 | 2.239 | |
| getHPI | 0.000 | 0.000 | 0.001 | |
| get_negativePPI | 0.001 | 0.000 | 0.002 | |
| get_positivePPI | 0.000 | 0.000 | 0.001 | |
| impute_missing_data | 0.002 | 0.001 | 0.002 | |
| plotPPI | 0.079 | 0.003 | 0.082 | |
| pred_ensembel | 16.317 | 0.389 | 13.827 | |
| var_imp | 54.664 | 2.296 | 57.112 | |