| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-04-17 11:36:02 -0400 (Wed, 17 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4414 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4437 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 993/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| iCheck 1.32.0 (landing page) Weiliang Qiu
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the iCheck package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iCheck.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: iCheck |
| Version: 1.32.0 |
| Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:iCheck.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings iCheck_1.32.0.tar.gz |
| StartedAt: 2024-04-15 23:53:02 -0400 (Mon, 15 Apr 2024) |
| EndedAt: 2024-04-15 23:59:10 -0400 (Mon, 15 Apr 2024) |
| EllapsedTime: 367.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: iCheck.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:iCheck.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings iCheck_1.32.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/iCheck.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘iCheck/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘iCheck’ version ‘1.32.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘iCheck’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘iCheck.Rnw’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
iCheck.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL iCheck ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘iCheck’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’ ** testing if installed package can be loaded from final location No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’ ** testing if installed package keeps a record of temporary installation path * DONE (iCheck)
iCheck.Rcheck/iCheck-Ex.timings
| name | user | system | elapsed | |
| LumiBatch2Table | 0.101 | 0.000 | 0.101 | |
| R2PlotFunc | 0.249 | 0.012 | 0.222 | |
| boxPlots | 0.145 | 0.008 | 0.153 | |
| densityPlots | 0.093 | 0.000 | 0.094 | |
| genSimData.BayesNormal | 0.023 | 0.006 | 0.029 | |
| getPCAFunc | 0.044 | 0.001 | 0.045 | |
| glmWrapper | 0.332 | 0.024 | 0.356 | |
| lkhrWrapper | 0.409 | 0.016 | 0.425 | |
| lmFitPaired | 0.044 | 0.000 | 0.043 | |
| lmFitWrapper | 0.039 | 0.000 | 0.039 | |
| pca2DPlot | 0.077 | 0.000 | 0.078 | |
| pca3DPlot | 0.05 | 0.00 | 0.05 | |
| plotCurves | 0.033 | 0.004 | 0.037 | |
| plotQCCurves | 0.054 | 0.008 | 0.061 | |
| plotSamplep95p05 | 0.051 | 0.004 | 0.055 | |
| quantilePlot | 0.091 | 0.004 | 0.079 | |
| scatterPlots | 0.088 | 0.008 | 0.095 | |
| sortExpressionSet | 0.036 | 0.012 | 0.047 | |