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This page was generated on 2024-04-17 11:35:46 -0400 (Wed, 17 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4676
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4414
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4437
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 63/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AneuFinder 1.30.0  (landing page)
Aaron Taudt
Snapshot Date: 2024-04-15 14:05:01 -0400 (Mon, 15 Apr 2024)
git_url: https://git.bioconductor.org/packages/AneuFinder
git_branch: RELEASE_3_18
git_last_commit: f0c9ccf
git_last_commit_date: 2023-10-24 10:48:50 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

INSTALL results for AneuFinder on nebbiolo2


To the developers/maintainers of the AneuFinder package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AneuFinder.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: AneuFinder
Version: 1.30.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL AneuFinder
StartedAt: 2024-04-15 15:17:58 -0400 (Mon, 15 Apr 2024)
EndedAt: 2024-04-15 15:18:37 -0400 (Mon, 15 Apr 2024)
EllapsedTime: 39.6 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL AneuFinder
###
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* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘AneuFinder’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c R_interface.cpp -o R_interface.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c densities.cpp -o densities.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c init.cpp -o init.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c loghmm.cpp -o loghmm.o
loghmm.cpp:320: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  320 |         #pragma omp parallel for
      | 
loghmm.cpp:480: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  480 |         #pragma omp parallel for
      | 
loghmm.cpp:518: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  518 |                 #pragma omp parallel for
      | 
loghmm.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  583 |         #pragma omp parallel for
      | 
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c scalehmm.cpp -o scalehmm.o
scalehmm.cpp:384: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  384 |         #pragma omp parallel for
      | 
scalehmm.cpp:400: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  400 |         #pragma omp parallel for
      | 
scalehmm.cpp:694: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  694 |         #pragma omp parallel for
      | 
scalehmm.cpp:732: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  732 |                 #pragma omp parallel for
      | 
scalehmm.cpp:791: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  791 |         #pragma omp parallel for
      | 
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c utility.cpp -o utility.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o AneuFinder.so R_interface.o densities.o init.o loghmm.o scalehmm.o utility.o -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.18-bioc/R/site-library/00LOCK-AneuFinder/00new/AneuFinder/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AneuFinder)