Alexis Delabriere
| Snapshot Date: 2023-10-12 07:30:02 -0400 (Thu, 12 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/plasFIA |
| git_branch: RELEASE_3_17 |
| git_last_commit: c6f5c58 |
| git_last_commit_date: 2023-04-25 10:43:38 -0400 (Tue, 25 Apr 2023) |
| Back to Build/check report for BioC 3.17 experimental data |
|
This page was generated on 2023-10-12 14:51:35 -0400 (Thu, 12 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 287/421 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
Alexis Delabriere
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | |||||||
|
To the developers/maintainers of the plasFIA package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: plasFIA |
| Version: 1.28.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:plasFIA.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings plasFIA_1.28.0.tar.gz |
| StartedAt: 2023-10-12 11:50:42 -0400 (Thu, 12 Oct 2023) |
| EndedAt: 2023-10-12 11:54:58 -0400 (Thu, 12 Oct 2023) |
| EllapsedTime: 255.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: plasFIA.Rcheck |
| Warnings: 1 |
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### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:plasFIA.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings plasFIA_1.28.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/plasFIA.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘plasFIA/DESCRIPTION’ ... OK
* this is package ‘plasFIA’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘plasFIA’ can be installed ... WARNING
Found the following significant warnings:
Warning: Package 'proFIA' is deprecated and will be removed from Bioconductor
Warning: Package 'plasFIA' is deprecated and will be removed from Bioconductor
See ‘/home/biocbuild/bbs-3.17-data-experiment/meat/plasFIA.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
installed size is 14.3Mb
sub-directories of 1Mb or more:
mzML 13.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘proFIA’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/home/biocbuild/bbs-3.17-data-experiment/meat/plasFIA.Rcheck/00check.log’
for details.
plasFIA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL plasFIA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘plasFIA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning message: Package 'proFIA' is deprecated and will be removed from Bioconductor version 3.18 ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location Warning: Package 'proFIA' is deprecated and will be removed from Bioconductor version 3.18 Warning: Package 'plasFIA' is deprecated and will be removed from Bioconductor version 3.18 ** testing if installed package can be loaded from final location Warning: Package 'proFIA' is deprecated and will be removed from Bioconductor version 3.18 Warning: Package 'plasFIA' is deprecated and will be removed from Bioconductor version 3.18 ** testing if installed package keeps a record of temporary installation path * DONE (plasFIA)