##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mammaPrintData.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings mammaPrintData_1.36.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/mammaPrintData.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘mammaPrintData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mammaPrintData’ version ‘1.36.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mammaPrintData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 224.1Mb
  sub-directories of 1Mb or more:
    data      10.5Mb
    extdata  213.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘mammaPrintData.Rnw’ using ‘UTF-8’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-data-experiment/meat/mammaPrintData.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL mammaPrintData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘mammaPrintData’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
ℹ Using R 4.3.1 (lockfile was generated with R 4.2.3)
Warning message:
This project is configured to use Bioconductor 3.15, which is not compatible with R 4.3.1.
Use 'renv::init(bioconductor = "3.15")' to re-initialize this project with the appropriate Bioconductor release.
 
** installing vignettes
** testing if installed package can be loaded from temporary location
ℹ Using R 4.3.1 (lockfile was generated with R 4.2.3)
Warning message:
This project is configured to use Bioconductor 3.15, which is not compatible with R 4.3.1.
Use 'renv::init(bioconductor = "3.15")' to re-initialize this project with the appropriate Bioconductor release.
 
** testing if installed package can be loaded from final location
ℹ Using R 4.3.1 (lockfile was generated with R 4.2.3)
Warning message:
This project is configured to use Bioconductor 3.15, which is not compatible with R 4.3.1.
Use 'renv::init(bioconductor = "3.15")' to re-initialize this project with the appropriate Bioconductor release.
 
** testing if installed package keeps a record of temporary installation path
* DONE (mammaPrintData)