| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:13 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2012/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ssize 1.74.0 (landing page) Gregory R. Warnes
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the ssize package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ssize |
| Version: 1.74.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ssize.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ssize_1.74.0.tar.gz |
| StartedAt: 2023-10-19 04:37:22 -0400 (Thu, 19 Oct 2023) |
| EndedAt: 2023-10-19 04:38:22 -0400 (Thu, 19 Oct 2023) |
| EllapsedTime: 60.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ssize.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ssize.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ssize_1.74.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/ssize.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ssize/DESCRIPTION’ ... OK
* this is package ‘ssize’ version ‘1.74.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ssize’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘xtable’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
crit.fn: no visible global function definition for ‘pt’
delta: no visible global function definition for ‘power.t.test’
delta.plot: no visible global function definition for ‘ecdf’
delta.plot: no visible global function definition for ‘axis’
delta.plot: no visible global function definition for ‘par’
delta.plot: no visible global function definition for ‘lines’
delta.plot: no visible global function definition for ‘text’
pow: no visible global function definition for ‘power.t.test’
power.plot: no visible global function definition for ‘ecdf’
power.plot: no visible global function definition for ‘axis’
power.plot: no visible global function definition for ‘par’
power.plot: no visible global function definition for ‘lines’
power.plot: no visible global function definition for ‘text’
power.t.test.FDR: no visible global function definition for ‘uniroot’
ssize: no visible global function definition for ‘power.t.test’
ssize.plot: no visible global function definition for ‘ecdf’
ssize.plot: no visible global function definition for ‘axis’
ssize.plot: no visible global function definition for ‘par’
ssize.plot: no visible global function definition for ‘lines’
ssize.plot: no visible global function definition for ‘text’
Undefined global functions or variables:
axis ecdf lines par power.t.test pt text uniroot
Consider adding
importFrom("graphics", "axis", "lines", "par", "text")
importFrom("stats", "ecdf", "power.t.test", "pt", "uniroot")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/ssize.Rcheck/00check.log’
for details.
ssize.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ssize ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘ssize’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ssize)
ssize.Rcheck/ssize-Ex.timings
| name | user | system | elapsed | |
| exp.sd | 0.034 | 0.006 | 0.072 | |
| pow | 2.157 | 0.047 | 3.946 | |
| power.t.test.FDR | 0.031 | 0.002 | 0.057 | |