| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:37:58 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 158/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bgx 1.66.0 (landing page) Ernest Turro
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | ERROR | ERROR | skipped | skipped | ||||||||
|
To the developers/maintainers of the bgx package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: bgx |
| Version: 1.66.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bgx |
| StartedAt: 2023-10-15 21:40:25 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 21:40:37 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 12.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bgx
###
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* checking for file ‘bgx/DESCRIPTION’ ... OK
* preparing ‘bgx’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘bgx’ ...
** using staged installation
checking for gcc... clang -arch arm64
checking for C compiler default output file name... rm: a.out.dSYM: is a directory
a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch arm64 accepts -g... yes
checking for clang -arch arm64 option to accept ISO C89... none needed
checking for C compiler vendor... gnu
checking whether C compiler accepts -ffast-math... yes
checking whether C compiler accepts -O3... yes
checking build system type... aarch64-apple-darwin21.6.0
checking host system type... aarch64-apple-darwin21.6.0
checking for gcc architecture flag...
checking for gcc architecture flag... unknown
checking for clang -arch arm64 option to accept ISO C99... none needed
checking for main in -lm... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I ../boostIncl -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -falign-functions=64 -Wall -g -O2 -ffast-math -O3 -DUSING_R -c bgx.cc -o bgx.o
In file included from bgx.cc:32:
In file included from ./rand.hh:32:
In file included from ../boostIncl/boost/random.hpp:70:
../boostIncl/boost/random/uniform_on_sphere.hpp:55:25: error: no member named 'bind2nd' in namespace 'std'
std::bind2nd(std::divides<RealType>(), sqrt(sqsum)));
~~~~~^
bgx.cc:44:13: warning: 'FLUSH' macro redefined [-Wmacro-redefined]
#define FLUSH {R_FlushConsole(); R_ProcessEvents();}
^
./rand.hh:42:13: note: previous definition is here
#define FLUSH R_FlushConsole();
^
In file included from bgx.cc:36:
./bgx_updates.hh:47:8: warning: private field 'categories' is not used [-Wunused-private-field]
int* categories;
^
./bgx_updates.hh:310:8: warning: private field 'categories' is not used [-Wunused-private-field]
int *categories;
^
./bgx_updates.hh:311:7: warning: private field 'numberCategories' is not used [-Wunused-private-field]
int numberCategories;
^
4 warnings and 1 error generated.
make: *** [bgx.o] Error 1
ERROR: compilation failed for package ‘bgx’
* removing ‘/private/tmp/RtmpaAVbO2/Rinst92bb50953b87/bgx’
-----------------------------------
ERROR: package installation failed