| Back to Mac ARM64 build report for BioC 3.17 |
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This page was generated on 2023-10-20 09:38:15 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2217/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Xeva 1.16.0 (landing page) Benjamin Haibe-Kains
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the Xeva package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Xeva |
| Version: 1.16.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Xeva.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Xeva_1.16.0.tar.gz |
| StartedAt: 2023-10-19 10:20:58 -0400 (Thu, 19 Oct 2023) |
| EndedAt: 2023-10-19 10:29:27 -0400 (Thu, 19 Oct 2023) |
| EllapsedTime: 509.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Xeva.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Xeva.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Xeva_1.16.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/Xeva.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Xeva/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Xeva’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Xeva’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
Note: found 31 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
setResponse 3.165 0.182 5.789
downloadXevaSet 0.052 0.012 7.416
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/Xeva.Rcheck/00check.log’
for details.
Xeva.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Xeva ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘Xeva’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Xeva)
Xeva.Rcheck/Xeva-Ex.timings
| name | user | system | elapsed | |
| ABC | 0.006 | 0.002 | 0.015 | |
| AUC | 0.022 | 0.002 | 0.041 | |
| TGI | 0.000 | 0.000 | 0.001 | |
| addExperimentalDesign | 0.121 | 0.005 | 0.217 | |
| angle | 0.007 | 0.002 | 0.015 | |
| batchInfo | 0.128 | 0.004 | 0.234 | |
| createXevaSet | 0.105 | 0.032 | 0.249 | |
| dosePlot | 1.004 | 0.035 | 1.838 | |
| downloadXevaSet | 0.052 | 0.012 | 7.416 | |
| drugInform | 0.117 | 0.006 | 0.239 | |
| drugSensitivitySig | 0.355 | 0.022 | 0.700 | |
| getExperiment | 0.188 | 0.020 | 0.377 | |
| getMolecularProfiles | 0.113 | 0.003 | 0.210 | |
| lmm | 0.095 | 0.006 | 0.185 | |
| mRECIST | 0.002 | 0.000 | 0.006 | |
| modelInfo | 0.120 | 0.004 | 0.232 | |
| plotPDX | 1.480 | 0.091 | 2.878 | |
| plotmRECIST | 2.231 | 0.104 | 4.573 | |
| response | 0.159 | 0.004 | 0.290 | |
| selectModelIds | 0.181 | 0.004 | 0.341 | |
| sensitivity | 0.121 | 0.004 | 0.225 | |
| setResponse | 3.165 | 0.182 | 5.789 | |
| slope | 0.012 | 0.002 | 0.021 | |
| subsetXeva | 0.208 | 0.005 | 0.446 | |
| summarizeMolecularProfiles | 0.163 | 0.007 | 0.641 | |
| summarizeResponse | 0.217 | 0.019 | 0.600 | |
| waterfall | 1.000 | 0.249 | 2.607 | |