| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:10 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1655/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RCX 1.4.0 (landing page) Florian Auer
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the RCX package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RCX |
| Version: 1.4.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RCX.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RCX_1.4.0.tar.gz |
| StartedAt: 2023-10-18 17:44:45 -0400 (Wed, 18 Oct 2023) |
| EndedAt: 2023-10-18 17:46:12 -0400 (Wed, 18 Oct 2023) |
| EllapsedTime: 86.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RCX.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RCX.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RCX_1.4.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/RCX.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RCX/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RCX’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RCX’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘NEWS.md’:
No news entries found.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/RCX.Rcheck/00check.log’
for details.
RCX.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RCX ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘RCX’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCX)
RCX.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(RCX)
>
> test_check("RCX")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 60 ]
>
> proc.time()
user system elapsed
2.887 0.154 4.666
RCX.Rcheck/RCX-Ex.timings
| name | user | system | elapsed | |
| CartesianLayout | 0.004 | 0.001 | 0.008 | |
| Convert-Names-and-Classes | 0.000 | 0.000 | 0.001 | |
| CyGroups | 0.005 | 0.001 | 0.011 | |
| CyHiddenAttributes | 0.141 | 0.007 | 0.223 | |
| CyNetworkRelations | 0.001 | 0.001 | 0.002 | |
| CySubNetworks | 0.003 | 0.001 | 0.004 | |
| CyTableColumn | 0.006 | 0.001 | 0.008 | |
| CyVisualProperties | 0.019 | 0.003 | 0.031 | |
| CyVisualProperty | 0.011 | 0.002 | 0.022 | |
| CyVisualPropertyDependencies | 0.008 | 0.001 | 0.013 | |
| CyVisualPropertyMappings | 0.005 | 0.001 | 0.008 | |
| CyVisualPropertyProperties | 0.004 | 0.000 | 0.005 | |
| EdgeAttributes | 0.017 | 0.001 | 0.029 | |
| Edges | 0.002 | 0.000 | 0.002 | |
| Igraph | 2.714 | 0.051 | 4.281 | |
| Meta-data | 0.036 | 0.002 | 0.052 | |
| NetworkAttributes | 0.010 | 0.001 | 0.017 | |
| NodeAttributes | 0.020 | 0.002 | 0.030 | |
| Nodes | 0.002 | 0.001 | 0.005 | |
| RCX-object | 0.269 | 0.006 | 0.419 | |
| aspectClasses | 0.001 | 0.001 | 0.002 | |
| checks | 0.000 | 0.001 | 0.000 | |
| convert-data-types-and-values | 0.002 | 0.000 | 0.002 | |
| convert2json | 0 | 0 | 0 | |
| countElements | 0.010 | 0.001 | 0.013 | |
| custom-print | 0.006 | 0.001 | 0.008 | |
| dot-addAspectNameToJson | 0.000 | 0.000 | 0.001 | |
| dot-addAttributeData | 0 | 0 | 0 | |
| dot-aspectClass | 0.001 | 0.001 | 0.001 | |
| dot-convertRawList | 0 | 0 | 0 | |
| dot-createAttributeAspect | 0 | 0 | 0 | |
| dot-createCyVpPorD | 0.001 | 0.000 | 0.001 | |
| dot-filterBy | 0.000 | 0.000 | 0.001 | |
| dot-format | 0 | 0 | 0 | |
| dot-infer | 0 | 0 | 0 | |
| dot-json2RDataType | 0.000 | 0.000 | 0.001 | |
| dot-jsonL | 0.000 | 0.001 | 0.001 | |
| dot-jsonV | 0.000 | 0.000 | 0.001 | |
| dot-log | 0.000 | 0.001 | 0.000 | |
| dot-mergeAttributesAspect | 0 | 0 | 0 | |
| dot-mergeIdAspect | 0.000 | 0.000 | 0.001 | |
| dot-modClass | 0 | 0 | 0 | |
| dot-pasteC | 0 | 0 | 0 | |
| dot-renameDF | 0.002 | 0.001 | 0.002 | |
| dot-stop | 0.001 | 0.001 | 0.000 | |
| dot-summaryAspect | 0.002 | 0.000 | 0.001 | |
| dot-transformListLength-set | 0.003 | 0.000 | 0.003 | |
| dot-transformVLD | 0.005 | 0.000 | 0.007 | |
| getCyVisualProperty | 0.012 | 0.001 | 0.018 | |
| graphNEL | 2.996 | 0.036 | 4.552 | |
| hasIds | 0.008 | 0.001 | 0.012 | |
| idProperty | 0.001 | 0.000 | 0.001 | |
| jsonToRCX | 0.003 | 0.000 | 0.005 | |
| markAttributeColumn | 0.001 | 0.000 | 0.005 | |
| markRefColumn | 0.001 | 0.000 | 0.001 | |
| maxId | 0.001 | 0.000 | 0.002 | |
| rcxToJson | 0.002 | 0.001 | 0.006 | |
| readCX | 0.659 | 0.008 | 1.020 | |
| referredBy | 0.010 | 0.000 | 0.016 | |
| refersTo | 0.001 | 0.000 | 0.001 | |
| setExtension | 0 | 0 | 0 | |
| summary | 0.014 | 0.001 | 0.022 | |
| toCX | 0.013 | 0.001 | 0.019 | |
| updateCartesianLayout | 0.053 | 0.003 | 0.090 | |
| updateCyGroups | 0.032 | 0.001 | 0.050 | |
| updateCyHiddenAttributes | 0.051 | 0.002 | 0.084 | |
| updateCyNetworkRelations | 0.042 | 0.002 | 0.068 | |
| updateCySubNetworks | 0.036 | 0.002 | 0.059 | |
| updateCyTableColumn | 0.049 | 0.002 | 0.079 | |
| updateCyVisualProperties | 0.277 | 0.015 | 0.443 | |
| updateCyVisualProperty | 0.076 | 0.004 | 0.122 | |
| updateEdgeAttributes | 0.056 | 0.002 | 0.085 | |
| updateEdges | 0.025 | 0.001 | 0.041 | |
| updateMetaDataProperties | 0.027 | 0.002 | 0.044 | |
| updateNetworkAttributes | 0.050 | 0.002 | 0.082 | |
| updateNodeAttributes | 0.066 | 0.002 | 0.101 | |
| updateNodes | 0.017 | 0.001 | 0.030 | |
| validate | 0.289 | 0.008 | 0.449 | |
| visualize | 0.009 | 0.001 | 0.016 | |
| writeCX | 0 | 0 | 0 | |
| writeHTML | 0.071 | 0.052 | 0.188 | |