| Back to Mac ARM64 build report for BioC 3.17 |
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This page was generated on 2023-10-20 09:38:08 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1495/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PepsNMR 1.18.0 (landing page) Manon Martin
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the PepsNMR package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: PepsNMR |
| Version: 1.18.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PepsNMR_1.18.0.tar.gz |
| StartedAt: 2023-10-18 14:05:21 -0400 (Wed, 18 Oct 2023) |
| EndedAt: 2023-10-18 14:24:51 -0400 (Wed, 18 Oct 2023) |
| EllapsedTime: 1170.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PepsNMR.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PepsNMR_1.18.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/PepsNMR.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PepsNMR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PepsNMR’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PepsNMR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) Normalization.Rd:47: Escaped LaTeX specials: \&
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
PEPSNMR-package 259.086 10.539 504.135
PreprocessingChain 251.593 11.036 511.939
Warping 15.275 0.864 22.680
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/PepsNMR.Rcheck/00check.log’
for details.
PepsNMR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL PepsNMR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘PepsNMR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PepsNMR)
PepsNMR.Rcheck/PepsNMR-Ex.timings
| name | user | system | elapsed | |
| Apodization | 0.628 | 0.048 | 1.203 | |
| BaselineCorrection | 0.514 | 0.042 | 0.992 | |
| Bucketing | 0.063 | 0.002 | 0.122 | |
| Draw | 1.459 | 0.058 | 2.758 | |
| DrawPCA | 0.773 | 0.029 | 1.445 | |
| DrawSignal | 0.707 | 0.022 | 1.308 | |
| FirstOrderPhaseCorrection | 0.047 | 0.002 | 0.091 | |
| FourierTransform | 0.030 | 0.002 | 0.062 | |
| GroupDelayCorrection | 0.064 | 0.005 | 0.126 | |
| InternalReferencing | 0.029 | 0.002 | 0.054 | |
| NegativeValuesZeroing | 0.029 | 0.003 | 0.061 | |
| Normalization | 0.014 | 0.001 | 0.028 | |
| PEPSNMR-package | 259.086 | 10.539 | 504.135 | |
| PreprocessingChain | 251.593 | 11.036 | 511.939 | |
| ReadFids | 0.263 | 0.052 | 0.445 | |
| RegionRemoval | 0.015 | 0.001 | 0.022 | |
| SolventSuppression | 0.094 | 0.013 | 0.166 | |
| Warping | 15.275 | 0.864 | 22.680 | |
| WindowSelection | 0.030 | 0.002 | 0.050 | |
| ZeroFilling | 0.081 | 0.003 | 0.124 | |
| ZeroOrderPhaseCorrection | 0.089 | 0.013 | 0.145 | |
| ZoneAggregation | 0.316 | 0.029 | 0.516 | |