| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:07 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1327/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MultiBaC 1.10.0 (landing page) The package maintainer
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the MultiBaC package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MultiBaC |
| Version: 1.10.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MultiBaC.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MultiBaC_1.10.0.tar.gz |
| StartedAt: 2023-10-18 10:15:19 -0400 (Wed, 18 Oct 2023) |
| EndedAt: 2023-10-18 10:18:40 -0400 (Wed, 18 Oct 2023) |
| EllapsedTime: 200.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MultiBaC.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MultiBaC.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MultiBaC_1.10.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/MultiBaC.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MultiBaC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MultiBaC’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MultiBaC’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
MultiBaC 10.174 0.145 12.670
ARSyNbac 9.750 0.303 14.359
plot 9.855 0.074 15.173
inner_relPlot 9.840 0.076 15.078
explained_varPlot 9.828 0.075 15.136
plot_pca 9.797 0.074 15.187
Q2_plot 9.568 0.075 14.761
batchCorrection 9.513 0.071 14.628
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
MultiBaC.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL MultiBaC ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘MultiBaC’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiBaC)
MultiBaC.Rcheck/MultiBaC-Ex.timings
| name | user | system | elapsed | |
| ARSyNbac | 9.750 | 0.303 | 14.359 | |
| MultiBaC | 10.174 | 0.145 | 12.670 | |
| Q2_plot | 9.568 | 0.075 | 14.761 | |
| batchCorrection | 9.513 | 0.071 | 14.628 | |
| batchEstPlot | 1.005 | 0.017 | 1.576 | |
| createMbac | 0.450 | 0.006 | 0.717 | |
| explained_varPlot | 9.828 | 0.075 | 15.136 | |
| genMissingOmics | 1.138 | 0.014 | 1.775 | |
| genModelList | 0.547 | 0.007 | 0.845 | |
| inner_relPlot | 9.840 | 0.076 | 15.078 | |
| multiyeast | 0.002 | 0.002 | 0.007 | |
| plot | 9.855 | 0.074 | 15.173 | |
| plot_pca | 9.797 | 0.074 | 15.187 | |
| summary | 0.422 | 0.005 | 0.602 | |