| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:04 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 949/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.6.0 (landing page) Matineh Rahmatbakhsh
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the HPiP package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.6.0.tar.gz |
| StartedAt: 2023-10-18 01:03:22 -0400 (Wed, 18 Oct 2023) |
| EndedAt: 2023-10-18 01:11:13 -0400 (Wed, 18 Oct 2023) |
| EllapsedTime: 471.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/HPiP.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 42.582 0.969 63.304
corr_plot 40.789 1.029 61.326
FSmethod 39.735 0.996 58.749
pred_ensembel 15.196 0.275 20.017
enrichfindP 0.515 0.081 16.839
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 99.093011
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 106.043014
iter 10 value 93.849227
iter 20 value 93.543689
final value 93.514657
converged
Fitting Repeat 3
# weights: 103
initial value 107.281845
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 94.519683
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.273292
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 106.548793
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 94.774829
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 101.978797
iter 10 value 93.297653
final value 93.102331
converged
Fitting Repeat 4
# weights: 305
initial value 97.311935
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 95.211865
final value 94.484197
converged
Fitting Repeat 1
# weights: 507
initial value 99.406244
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 106.604603
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 101.519269
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 103.499455
iter 10 value 94.318609
final value 94.305884
converged
Fitting Repeat 5
# weights: 507
initial value 99.968723
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.145233
iter 10 value 94.351536
iter 20 value 86.407142
iter 30 value 83.064890
iter 40 value 82.332755
iter 50 value 82.092483
iter 60 value 82.059682
final value 82.059299
converged
Fitting Repeat 2
# weights: 103
initial value 98.587546
iter 10 value 94.163240
iter 20 value 89.422796
iter 30 value 83.597208
iter 40 value 82.051682
iter 50 value 82.016871
iter 60 value 81.910021
iter 70 value 81.632849
iter 80 value 81.512130
final value 81.509585
converged
Fitting Repeat 3
# weights: 103
initial value 101.592059
iter 10 value 94.504609
iter 20 value 94.487219
iter 30 value 94.259353
iter 40 value 93.834082
iter 50 value 93.776061
iter 60 value 93.769689
iter 70 value 93.768896
iter 80 value 93.768383
final value 93.767892
converged
Fitting Repeat 4
# weights: 103
initial value 104.363444
iter 10 value 94.438908
iter 20 value 91.645802
iter 30 value 90.884789
iter 40 value 90.056945
iter 50 value 90.022080
iter 60 value 89.770602
final value 89.769459
converged
Fitting Repeat 5
# weights: 103
initial value 112.187169
iter 10 value 94.556282
iter 20 value 94.482744
iter 30 value 91.226755
iter 40 value 90.975508
iter 50 value 90.860460
iter 60 value 90.756500
final value 90.756332
converged
Fitting Repeat 1
# weights: 305
initial value 102.026531
iter 10 value 94.659959
iter 20 value 92.861751
iter 30 value 86.084892
iter 40 value 82.037221
iter 50 value 80.432058
iter 60 value 80.130283
iter 70 value 79.854474
iter 80 value 79.406567
iter 90 value 78.520683
iter 100 value 78.041910
final value 78.041910
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.649091
iter 10 value 94.548945
iter 20 value 94.488604
iter 30 value 93.925023
iter 40 value 89.178234
iter 50 value 84.918749
iter 60 value 84.311216
iter 70 value 83.800395
iter 80 value 82.958100
iter 90 value 80.352916
iter 100 value 80.105104
final value 80.105104
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.980360
iter 10 value 94.772264
iter 20 value 87.227395
iter 30 value 84.485540
iter 40 value 82.429683
iter 50 value 81.014295
iter 60 value 79.862328
iter 70 value 78.939206
iter 80 value 78.751353
iter 90 value 78.658602
iter 100 value 78.646098
final value 78.646098
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 132.797483
iter 10 value 95.830014
iter 20 value 90.515405
iter 30 value 88.468790
iter 40 value 84.526879
iter 50 value 82.522863
iter 60 value 80.542395
iter 70 value 80.077430
iter 80 value 79.718104
iter 90 value 79.599408
iter 100 value 79.394732
final value 79.394732
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.156873
iter 10 value 94.486943
iter 20 value 94.290298
iter 30 value 93.274374
iter 40 value 87.568378
iter 50 value 82.826780
iter 60 value 82.088017
iter 70 value 81.370696
iter 80 value 81.312308
iter 90 value 81.225080
iter 100 value 81.179944
final value 81.179944
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.624794
iter 10 value 94.482544
iter 20 value 86.049428
iter 30 value 84.357552
iter 40 value 82.932373
iter 50 value 80.524838
iter 60 value 80.349030
iter 70 value 80.114790
iter 80 value 79.219440
iter 90 value 78.612935
iter 100 value 78.137727
final value 78.137727
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 120.580281
iter 10 value 96.371559
iter 20 value 92.706868
iter 30 value 85.004223
iter 40 value 80.119283
iter 50 value 79.793596
iter 60 value 79.306854
iter 70 value 78.179925
iter 80 value 77.875981
iter 90 value 77.561457
iter 100 value 77.526016
final value 77.526016
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.467107
iter 10 value 95.693536
iter 20 value 86.044667
iter 30 value 83.173994
iter 40 value 79.919600
iter 50 value 78.354857
iter 60 value 77.823892
iter 70 value 77.573249
iter 80 value 77.490163
iter 90 value 77.418228
iter 100 value 77.261431
final value 77.261431
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 132.160381
iter 10 value 95.058827
iter 20 value 91.300746
iter 30 value 90.527565
iter 40 value 88.739305
iter 50 value 84.221365
iter 60 value 83.564629
iter 70 value 79.508562
iter 80 value 79.200908
iter 90 value 78.817422
iter 100 value 78.132249
final value 78.132249
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.923016
iter 10 value 94.776067
iter 20 value 87.965783
iter 30 value 82.517364
iter 40 value 81.988011
iter 50 value 81.062889
iter 60 value 78.802040
iter 70 value 78.075676
iter 80 value 77.916994
iter 90 value 77.841915
iter 100 value 77.683453
final value 77.683453
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.178247
final value 94.485877
converged
Fitting Repeat 2
# weights: 103
initial value 94.342376
iter 10 value 82.395387
iter 20 value 81.630554
iter 30 value 80.040000
iter 40 value 79.985883
final value 79.985708
converged
Fitting Repeat 3
# weights: 103
initial value 110.969182
final value 94.485959
converged
Fitting Repeat 4
# weights: 103
initial value 95.515163
final value 94.485631
converged
Fitting Repeat 5
# weights: 103
initial value 98.919979
final value 94.485808
converged
Fitting Repeat 1
# weights: 305
initial value 115.823220
iter 10 value 93.788265
iter 20 value 93.786859
final value 93.786140
converged
Fitting Repeat 2
# weights: 305
initial value 104.510716
iter 10 value 94.310853
iter 20 value 94.026525
final value 93.851911
converged
Fitting Repeat 3
# weights: 305
initial value 113.577314
iter 10 value 94.488608
iter 20 value 94.376908
iter 30 value 84.171911
iter 40 value 83.268024
iter 50 value 83.159222
iter 60 value 83.132131
final value 83.131975
converged
Fitting Repeat 4
# weights: 305
initial value 94.960148
iter 10 value 94.447827
iter 20 value 94.443922
iter 30 value 89.897689
iter 40 value 80.433700
iter 50 value 80.386857
iter 60 value 80.380782
iter 70 value 80.365929
iter 80 value 80.346026
final value 80.345973
converged
Fitting Repeat 5
# weights: 305
initial value 121.490635
iter 10 value 94.489039
iter 20 value 94.397839
final value 93.922732
converged
Fitting Repeat 1
# weights: 507
initial value 94.393767
iter 10 value 87.262737
iter 20 value 85.921737
iter 30 value 85.870313
iter 40 value 85.868257
iter 50 value 85.838275
iter 60 value 85.672427
iter 70 value 85.666161
iter 80 value 85.656952
iter 90 value 81.706674
iter 100 value 81.434492
final value 81.434492
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.046925
iter 10 value 93.736730
iter 20 value 93.701682
iter 30 value 93.678007
iter 40 value 93.660282
iter 50 value 93.659456
iter 60 value 93.658521
iter 70 value 92.816555
iter 80 value 92.815012
iter 90 value 92.814728
iter 100 value 92.742421
final value 92.742421
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 101.589494
iter 10 value 94.451393
iter 20 value 93.876228
iter 30 value 93.853125
iter 40 value 93.754554
iter 50 value 93.754238
iter 60 value 93.753388
iter 70 value 93.387371
iter 80 value 83.801495
iter 90 value 83.699087
iter 100 value 83.697820
final value 83.697820
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 99.465687
iter 10 value 94.491745
iter 20 value 94.423329
final value 93.784074
converged
Fitting Repeat 5
# weights: 507
initial value 98.640928
iter 10 value 94.491921
iter 20 value 93.740251
iter 30 value 81.957267
iter 40 value 81.933093
iter 50 value 81.916963
iter 60 value 81.659367
iter 70 value 81.654478
final value 81.652489
converged
Fitting Repeat 1
# weights: 103
initial value 99.736974
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 99.150730
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.864662
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 116.983286
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 96.087004
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 113.058944
iter 10 value 92.845505
iter 20 value 92.521354
final value 92.521274
converged
Fitting Repeat 2
# weights: 305
initial value 102.718008
iter 10 value 92.945357
final value 92.945355
converged
Fitting Repeat 3
# weights: 305
initial value 123.730549
iter 10 value 92.951436
iter 20 value 92.945356
iter 20 value 92.945355
iter 20 value 92.945355
final value 92.945355
converged
Fitting Repeat 4
# weights: 305
initial value 101.510873
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 102.266924
iter 10 value 92.945356
iter 10 value 92.945356
iter 10 value 92.945356
final value 92.945356
converged
Fitting Repeat 1
# weights: 507
initial value 100.998000
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 96.624044
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 101.589059
iter 10 value 92.988213
final value 92.945355
converged
Fitting Repeat 4
# weights: 507
initial value 109.508172
iter 10 value 92.597284
iter 20 value 90.459032
final value 90.447059
converged
Fitting Repeat 5
# weights: 507
initial value 95.708895
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 103.025595
iter 10 value 94.248824
iter 20 value 94.054855
iter 30 value 89.228372
iter 40 value 84.722391
iter 50 value 83.723910
iter 60 value 83.257107
iter 70 value 82.995662
iter 80 value 82.882156
iter 90 value 82.402160
iter 100 value 82.351426
final value 82.351426
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.633101
iter 10 value 93.948844
iter 20 value 84.227480
iter 30 value 83.999225
iter 40 value 83.303790
iter 50 value 83.096772
iter 60 value 82.909320
iter 70 value 82.884124
iter 80 value 82.830464
iter 90 value 82.353549
iter 100 value 82.339027
final value 82.339027
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.782540
iter 10 value 94.062404
iter 20 value 94.038791
iter 30 value 92.952450
iter 40 value 88.470311
iter 50 value 85.407709
iter 60 value 84.086426
iter 70 value 83.619552
iter 80 value 83.273194
iter 90 value 81.779853
iter 100 value 80.846500
final value 80.846500
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 100.303164
iter 10 value 93.999541
iter 20 value 92.943036
iter 30 value 92.832819
iter 40 value 92.823166
iter 50 value 92.821034
iter 60 value 92.821012
iter 70 value 92.820227
iter 70 value 92.820227
final value 92.820227
converged
Fitting Repeat 5
# weights: 103
initial value 96.452489
iter 10 value 94.070679
iter 20 value 94.057325
iter 30 value 87.547066
iter 40 value 84.777415
iter 50 value 83.422855
iter 60 value 83.074903
iter 70 value 82.919954
iter 80 value 82.881614
iter 80 value 82.881614
final value 82.881614
converged
Fitting Repeat 1
# weights: 305
initial value 107.966280
iter 10 value 93.295180
iter 20 value 83.778973
iter 30 value 83.433980
iter 40 value 82.846152
iter 50 value 81.183057
iter 60 value 79.496086
iter 70 value 78.965505
iter 80 value 78.419657
iter 90 value 78.181941
iter 100 value 78.020777
final value 78.020777
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.769232
iter 10 value 86.550420
iter 20 value 83.295511
iter 30 value 83.193757
iter 40 value 82.032273
iter 50 value 81.144984
iter 60 value 80.199388
iter 70 value 79.586029
iter 80 value 79.460251
iter 90 value 79.437341
iter 100 value 79.384864
final value 79.384864
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.042545
iter 10 value 94.310812
iter 20 value 92.812947
iter 30 value 84.659016
iter 40 value 83.218127
iter 50 value 82.047797
iter 60 value 81.116417
iter 70 value 80.762738
iter 80 value 80.669113
iter 90 value 80.666867
iter 100 value 80.666579
final value 80.666579
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 121.430890
iter 10 value 94.393820
iter 20 value 92.954476
iter 30 value 85.894147
iter 40 value 84.289777
iter 50 value 82.609047
iter 60 value 80.572757
iter 70 value 79.371824
iter 80 value 78.969507
iter 90 value 78.506604
iter 100 value 78.180413
final value 78.180413
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 125.618105
iter 10 value 94.739568
iter 20 value 89.529938
iter 30 value 83.690696
iter 40 value 82.566624
iter 50 value 82.468169
iter 60 value 82.264029
iter 70 value 81.258212
iter 80 value 79.750025
iter 90 value 79.434740
iter 100 value 79.224106
final value 79.224106
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.375341
iter 10 value 93.340799
iter 20 value 88.008146
iter 30 value 84.368616
iter 40 value 83.250203
iter 50 value 81.954885
iter 60 value 81.559485
iter 70 value 81.101971
iter 80 value 80.800222
iter 90 value 80.632464
iter 100 value 80.501012
final value 80.501012
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.778994
iter 10 value 93.694287
iter 20 value 92.954119
iter 30 value 92.893461
iter 40 value 92.747052
iter 50 value 87.562382
iter 60 value 81.138166
iter 70 value 79.939088
iter 80 value 79.503765
iter 90 value 78.532861
iter 100 value 78.142726
final value 78.142726
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 101.760680
iter 10 value 94.221832
iter 20 value 84.717014
iter 30 value 83.542360
iter 40 value 82.113230
iter 50 value 81.940567
iter 60 value 81.249145
iter 70 value 80.389331
iter 80 value 80.074827
iter 90 value 79.982495
iter 100 value 79.965593
final value 79.965593
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.216253
iter 10 value 94.179058
iter 20 value 93.703883
iter 30 value 92.805961
iter 40 value 92.620491
iter 50 value 89.910036
iter 60 value 85.804468
iter 70 value 84.349392
iter 80 value 81.525941
iter 90 value 80.907920
iter 100 value 80.360737
final value 80.360737
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 117.563642
iter 10 value 96.563254
iter 20 value 93.069265
iter 30 value 84.943091
iter 40 value 81.978866
iter 50 value 80.849771
iter 60 value 80.474655
iter 70 value 79.360232
iter 80 value 78.771243
iter 90 value 78.519722
iter 100 value 78.224830
final value 78.224830
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.404880
iter 10 value 94.054399
iter 20 value 94.032997
iter 30 value 93.041901
iter 40 value 92.522604
final value 92.522602
converged
Fitting Repeat 2
# weights: 103
initial value 99.636203
iter 10 value 92.947426
iter 20 value 92.946548
iter 30 value 92.943115
iter 40 value 92.523615
iter 50 value 89.136357
iter 60 value 86.078477
iter 70 value 85.669243
iter 80 value 84.097304
iter 90 value 79.866786
iter 100 value 77.696920
final value 77.696920
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 102.290742
iter 10 value 93.728016
iter 20 value 93.723521
iter 30 value 93.157603
iter 40 value 92.541728
iter 50 value 92.521911
iter 60 value 92.521826
final value 92.521824
converged
Fitting Repeat 4
# weights: 103
initial value 94.654178
final value 94.054571
converged
Fitting Repeat 5
# weights: 103
initial value 95.200349
final value 94.054668
converged
Fitting Repeat 1
# weights: 305
initial value 102.788596
iter 10 value 94.057645
iter 20 value 93.859134
iter 30 value 93.809072
iter 40 value 93.516717
iter 50 value 90.011951
iter 60 value 90.010613
iter 70 value 87.375603
iter 80 value 86.265129
iter 90 value 85.988142
final value 85.980466
converged
Fitting Repeat 2
# weights: 305
initial value 112.881769
iter 10 value 94.058093
iter 20 value 93.639586
iter 30 value 88.266801
iter 40 value 86.929284
iter 50 value 86.515066
iter 60 value 86.514461
iter 70 value 85.528309
iter 80 value 85.527256
iter 90 value 85.527110
final value 85.526943
converged
Fitting Repeat 3
# weights: 305
initial value 101.446382
iter 10 value 93.701772
iter 20 value 93.697531
iter 30 value 93.285155
iter 40 value 87.368260
iter 50 value 86.008091
iter 60 value 81.560888
iter 70 value 81.549378
final value 81.549020
converged
Fitting Repeat 4
# weights: 305
initial value 96.531323
iter 10 value 94.056165
iter 20 value 93.473364
final value 92.946331
converged
Fitting Repeat 5
# weights: 305
initial value 94.746307
iter 10 value 94.054183
iter 20 value 92.971193
final value 92.945964
converged
Fitting Repeat 1
# weights: 507
initial value 119.761142
iter 10 value 94.060718
iter 20 value 94.054373
iter 30 value 93.150844
final value 92.946188
converged
Fitting Repeat 2
# weights: 507
initial value 99.815336
iter 10 value 93.637327
iter 20 value 91.635836
iter 30 value 89.131402
iter 40 value 89.027321
iter 50 value 89.025742
iter 60 value 87.200569
iter 70 value 87.197167
iter 80 value 87.197073
iter 90 value 87.196819
iter 100 value 85.983596
final value 85.983596
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 121.278805
iter 10 value 94.055549
iter 20 value 93.907655
iter 30 value 92.947856
final value 92.947854
converged
Fitting Repeat 4
# weights: 507
initial value 102.406232
iter 10 value 92.529943
iter 20 value 92.528885
iter 30 value 92.524415
iter 40 value 92.524002
iter 50 value 92.522521
iter 60 value 92.182531
iter 70 value 88.599569
iter 80 value 81.504270
iter 90 value 80.315205
iter 100 value 78.842787
final value 78.842787
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 94.745203
iter 10 value 94.060569
iter 20 value 93.320936
iter 30 value 92.524792
iter 40 value 92.524073
iter 50 value 92.523725
iter 60 value 92.523396
iter 70 value 92.493257
iter 80 value 83.673549
iter 90 value 83.532622
iter 100 value 83.532165
final value 83.532165
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.492494
final value 94.326054
converged
Fitting Repeat 2
# weights: 103
initial value 95.923005
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 118.201687
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 109.327916
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 94.989992
iter 10 value 93.246207
iter 20 value 92.395996
iter 30 value 92.389199
final value 92.389186
converged
Fitting Repeat 1
# weights: 305
initial value 94.790359
final value 94.466823
converged
Fitting Repeat 2
# weights: 305
initial value 103.901183
iter 10 value 92.037797
final value 91.740981
converged
Fitting Repeat 3
# weights: 305
initial value 102.426541
iter 10 value 94.466823
iter 10 value 94.466823
iter 10 value 94.466823
final value 94.466823
converged
Fitting Repeat 4
# weights: 305
initial value 96.778681
iter 10 value 92.634720
iter 20 value 92.608991
final value 92.608648
converged
Fitting Repeat 5
# weights: 305
initial value 98.512682
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 97.023999
final value 94.466823
converged
Fitting Repeat 2
# weights: 507
initial value 121.783074
iter 10 value 94.484211
iter 10 value 94.484211
iter 10 value 94.484211
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 123.803193
final value 94.466823
converged
Fitting Repeat 4
# weights: 507
initial value 100.704090
iter 10 value 92.574411
final value 92.570161
converged
Fitting Repeat 5
# weights: 507
initial value 97.461700
iter 10 value 92.922007
final value 92.921209
converged
Fitting Repeat 1
# weights: 103
initial value 106.027921
iter 10 value 94.043030
iter 20 value 84.765424
iter 30 value 81.747074
iter 40 value 80.059334
iter 50 value 79.845797
iter 60 value 79.189583
iter 70 value 78.687268
iter 80 value 78.633340
final value 78.633339
converged
Fitting Repeat 2
# weights: 103
initial value 103.363283
iter 10 value 94.450702
iter 20 value 84.557088
iter 30 value 82.677038
iter 40 value 81.774932
iter 50 value 81.701210
iter 60 value 79.159019
iter 70 value 78.652887
iter 80 value 78.590311
iter 90 value 78.451275
final value 78.446458
converged
Fitting Repeat 3
# weights: 103
initial value 100.309600
iter 10 value 94.495091
iter 20 value 86.500065
iter 30 value 84.129257
iter 40 value 83.755848
iter 50 value 81.454719
iter 60 value 81.136626
iter 70 value 81.083262
final value 81.078190
converged
Fitting Repeat 4
# weights: 103
initial value 104.595913
iter 10 value 94.486559
iter 20 value 90.365366
iter 30 value 86.149998
iter 40 value 84.335601
iter 50 value 84.158559
iter 60 value 83.828878
iter 70 value 80.777617
iter 80 value 80.041199
iter 90 value 79.021912
iter 100 value 78.790059
final value 78.790059
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 99.608015
iter 10 value 94.224667
iter 20 value 86.273152
iter 30 value 83.201875
iter 40 value 80.416853
iter 50 value 79.459329
iter 60 value 79.371517
iter 70 value 79.311395
iter 80 value 79.172943
iter 90 value 79.011534
iter 100 value 78.805014
final value 78.805014
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 107.375946
iter 10 value 94.509733
iter 20 value 94.403085
iter 30 value 84.731851
iter 40 value 84.160467
iter 50 value 82.555969
iter 60 value 80.574208
iter 70 value 78.646527
iter 80 value 77.587842
iter 90 value 77.397614
iter 100 value 77.210017
final value 77.210017
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.628236
iter 10 value 94.325924
iter 20 value 93.878768
iter 30 value 86.737926
iter 40 value 84.906443
iter 50 value 82.677387
iter 60 value 81.808068
iter 70 value 81.512180
iter 80 value 80.142146
iter 90 value 78.377329
iter 100 value 77.874408
final value 77.874408
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 126.528101
iter 10 value 94.505863
iter 20 value 91.770269
iter 30 value 85.125691
iter 40 value 83.357959
iter 50 value 82.991500
iter 60 value 80.132296
iter 70 value 78.708105
iter 80 value 78.345462
iter 90 value 78.233634
iter 100 value 77.601820
final value 77.601820
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.199388
iter 10 value 97.603459
iter 20 value 95.538566
iter 30 value 87.369266
iter 40 value 83.259408
iter 50 value 79.380454
iter 60 value 78.838666
iter 70 value 78.412441
iter 80 value 77.988078
iter 90 value 77.575542
iter 100 value 77.422538
final value 77.422538
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 117.953034
iter 10 value 94.724477
iter 20 value 92.640455
iter 30 value 85.789685
iter 40 value 84.466578
iter 50 value 82.403760
iter 60 value 81.739710
iter 70 value 81.463356
iter 80 value 80.523033
iter 90 value 80.088495
iter 100 value 79.713452
final value 79.713452
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.235872
iter 10 value 94.500790
iter 20 value 93.952982
iter 30 value 82.445759
iter 40 value 82.183892
iter 50 value 81.541406
iter 60 value 80.168688
iter 70 value 79.061475
iter 80 value 78.199605
iter 90 value 78.042219
iter 100 value 77.826341
final value 77.826341
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 121.268887
iter 10 value 92.728352
iter 20 value 88.391404
iter 30 value 82.108874
iter 40 value 80.785624
iter 50 value 80.679340
iter 60 value 80.333087
iter 70 value 80.256294
iter 80 value 80.190100
iter 90 value 79.914443
iter 100 value 79.440868
final value 79.440868
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 115.782781
iter 10 value 94.669375
iter 20 value 89.137814
iter 30 value 85.531453
iter 40 value 80.775892
iter 50 value 79.416424
iter 60 value 78.812748
iter 70 value 77.690653
iter 80 value 77.548549
iter 90 value 77.304939
iter 100 value 77.201051
final value 77.201051
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.404450
iter 10 value 94.625888
iter 20 value 86.150458
iter 30 value 85.057945
iter 40 value 83.951504
iter 50 value 82.498484
iter 60 value 81.289635
iter 70 value 81.151268
iter 80 value 81.009599
iter 90 value 79.636487
iter 100 value 78.303670
final value 78.303670
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.829686
iter 10 value 94.483814
iter 20 value 83.526624
iter 30 value 82.157826
iter 40 value 81.958706
iter 50 value 80.492758
iter 60 value 79.381887
iter 70 value 79.004839
iter 80 value 78.454142
iter 90 value 77.960999
iter 100 value 77.827884
final value 77.827884
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 104.344671
final value 94.485762
converged
Fitting Repeat 2
# weights: 103
initial value 95.911214
final value 94.486116
converged
Fitting Repeat 3
# weights: 103
initial value 95.349168
final value 94.485648
converged
Fitting Repeat 4
# weights: 103
initial value 98.806476
final value 94.485702
converged
Fitting Repeat 5
# weights: 103
initial value 97.830934
final value 94.486083
converged
Fitting Repeat 1
# weights: 305
initial value 103.869133
iter 10 value 94.488600
iter 20 value 94.320170
iter 30 value 87.938396
iter 40 value 87.877477
iter 50 value 87.708603
iter 60 value 87.691509
iter 70 value 83.978801
iter 80 value 81.445477
iter 90 value 80.352005
iter 100 value 79.961928
final value 79.961928
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.919410
iter 10 value 94.489210
iter 20 value 86.034939
iter 30 value 83.800670
iter 40 value 83.799143
final value 83.798398
converged
Fitting Repeat 3
# weights: 305
initial value 106.316624
iter 10 value 94.489259
iter 20 value 94.471805
iter 30 value 92.365224
iter 40 value 88.917409
iter 50 value 87.933369
iter 60 value 82.957677
iter 70 value 82.170281
iter 80 value 79.498462
iter 90 value 77.989685
iter 100 value 77.857461
final value 77.857461
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.342011
iter 10 value 94.485550
iter 20 value 93.505510
iter 30 value 91.167042
final value 91.166956
converged
Fitting Repeat 5
# weights: 305
initial value 110.910273
iter 10 value 94.471625
iter 20 value 94.467335
iter 30 value 94.271544
iter 40 value 83.789629
iter 50 value 83.787061
iter 60 value 83.784871
iter 70 value 81.013884
iter 80 value 81.013680
iter 80 value 81.013680
final value 81.013680
converged
Fitting Repeat 1
# weights: 507
initial value 107.334332
iter 10 value 94.475774
iter 20 value 94.060883
iter 30 value 93.910176
iter 40 value 91.178906
iter 50 value 91.166577
final value 91.166550
converged
Fitting Repeat 2
# weights: 507
initial value 102.109041
iter 10 value 94.334068
iter 20 value 94.326513
iter 30 value 84.903239
iter 40 value 83.458883
iter 50 value 80.092112
final value 79.996814
converged
Fitting Repeat 3
# weights: 507
initial value 106.267370
iter 10 value 93.578818
iter 20 value 93.495325
iter 30 value 91.169268
iter 40 value 91.161184
iter 50 value 91.159691
iter 60 value 91.158886
final value 91.158879
converged
Fitting Repeat 4
# weights: 507
initial value 112.375012
iter 10 value 94.333971
iter 20 value 94.188556
iter 30 value 93.880371
final value 93.880081
converged
Fitting Repeat 5
# weights: 507
initial value 109.544778
iter 10 value 92.616948
iter 20 value 92.610805
iter 30 value 92.233650
iter 40 value 84.561849
iter 50 value 81.628594
iter 60 value 79.264523
iter 70 value 78.199316
iter 80 value 76.561065
iter 90 value 76.245005
iter 100 value 76.086090
final value 76.086090
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.868445
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 106.895761
final value 93.903984
converged
Fitting Repeat 3
# weights: 103
initial value 97.735739
final value 94.008696
converged
Fitting Repeat 4
# weights: 103
initial value 95.101965
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 96.445385
final value 94.052911
converged
Fitting Repeat 1
# weights: 305
initial value 95.875485
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 96.316852
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 100.445710
iter 10 value 94.032972
final value 94.032967
converged
Fitting Repeat 4
# weights: 305
initial value 97.797379
iter 10 value 93.628702
iter 20 value 93.277632
iter 30 value 93.277172
final value 93.277164
converged
Fitting Repeat 5
# weights: 305
initial value 100.005468
iter 10 value 91.837911
iter 20 value 86.346492
iter 30 value 85.079192
iter 40 value 83.167883
iter 50 value 83.122943
iter 60 value 83.070115
final value 83.067455
converged
Fitting Repeat 1
# weights: 507
initial value 106.173615
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 113.882300
iter 10 value 93.986764
iter 10 value 93.986764
iter 10 value 93.986764
final value 93.986764
converged
Fitting Repeat 3
# weights: 507
initial value 97.660687
final value 93.723634
converged
Fitting Repeat 4
# weights: 507
initial value 95.377641
final value 94.032967
converged
Fitting Repeat 5
# weights: 507
initial value 113.722384
final value 94.032967
converged
Fitting Repeat 1
# weights: 103
initial value 96.218149
iter 10 value 94.036005
iter 20 value 87.784746
iter 30 value 85.560812
iter 40 value 85.021679
iter 50 value 84.064111
iter 60 value 83.488665
iter 70 value 83.398020
iter 80 value 83.326556
final value 83.323541
converged
Fitting Repeat 2
# weights: 103
initial value 99.820919
iter 10 value 94.056501
iter 20 value 94.019008
iter 30 value 92.174276
iter 40 value 88.658081
iter 50 value 85.564036
iter 60 value 84.600722
iter 70 value 83.389426
iter 80 value 82.875338
iter 90 value 82.672757
iter 100 value 82.500461
final value 82.500461
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.208291
iter 10 value 94.057993
iter 20 value 88.432026
iter 30 value 86.687595
iter 40 value 85.846307
iter 50 value 85.567463
iter 60 value 85.387623
iter 70 value 84.570125
iter 80 value 83.437757
iter 90 value 83.037719
iter 100 value 83.032931
final value 83.032931
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 99.811435
iter 10 value 94.042629
iter 20 value 93.062627
iter 30 value 92.649199
iter 40 value 92.577596
iter 50 value 92.533718
iter 60 value 92.482540
final value 92.481188
converged
Fitting Repeat 5
# weights: 103
initial value 107.199545
iter 10 value 94.042871
iter 20 value 91.672879
iter 30 value 87.121264
iter 40 value 86.158218
iter 50 value 84.358555
iter 60 value 83.579004
iter 70 value 83.172948
iter 80 value 82.886608
iter 90 value 82.667185
final value 82.667114
converged
Fitting Repeat 1
# weights: 305
initial value 110.862593
iter 10 value 94.050849
iter 20 value 92.413919
iter 30 value 84.975086
iter 40 value 83.686800
iter 50 value 83.320678
iter 60 value 83.205481
iter 70 value 83.053602
iter 80 value 82.836461
iter 90 value 82.109595
iter 100 value 81.666507
final value 81.666507
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 111.823303
iter 10 value 94.121021
iter 20 value 90.646823
iter 30 value 87.253040
iter 40 value 86.811691
iter 50 value 86.615068
iter 60 value 86.364572
iter 70 value 85.767955
iter 80 value 84.042467
iter 90 value 83.060072
iter 100 value 82.491093
final value 82.491093
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 111.596629
iter 10 value 94.084227
iter 20 value 87.039884
iter 30 value 85.304612
iter 40 value 84.983930
iter 50 value 83.517453
iter 60 value 82.908157
iter 70 value 82.204391
iter 80 value 81.835634
iter 90 value 81.748772
iter 100 value 81.705816
final value 81.705816
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.318426
iter 10 value 94.059069
iter 20 value 91.283278
iter 30 value 89.629861
iter 40 value 87.151978
iter 50 value 82.140935
iter 60 value 81.311781
iter 70 value 80.550416
iter 80 value 80.088826
iter 90 value 80.014739
iter 100 value 79.974179
final value 79.974179
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 97.208089
iter 10 value 87.591146
iter 20 value 86.185892
iter 30 value 84.373048
iter 40 value 82.981783
iter 50 value 82.605682
iter 60 value 82.500387
iter 70 value 82.233252
iter 80 value 82.042063
iter 90 value 81.327165
iter 100 value 80.609096
final value 80.609096
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.423026
iter 10 value 94.117248
iter 20 value 88.352075
iter 30 value 85.642819
iter 40 value 84.962713
iter 50 value 82.749076
iter 60 value 82.328551
iter 70 value 81.726583
iter 80 value 81.240900
iter 90 value 81.007718
iter 100 value 80.840611
final value 80.840611
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 110.205790
iter 10 value 92.583901
iter 20 value 87.423458
iter 30 value 86.447537
iter 40 value 86.273698
iter 50 value 83.469386
iter 60 value 81.752986
iter 70 value 80.746826
iter 80 value 80.526102
iter 90 value 80.467864
iter 100 value 80.432520
final value 80.432520
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.723397
iter 10 value 94.559938
iter 20 value 86.509404
iter 30 value 84.817581
iter 40 value 84.160749
iter 50 value 83.578810
iter 60 value 83.325234
iter 70 value 82.977867
iter 80 value 82.075745
iter 90 value 81.977374
iter 100 value 81.723592
final value 81.723592
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.261387
iter 10 value 93.907648
iter 20 value 91.469172
iter 30 value 86.750985
iter 40 value 85.287740
iter 50 value 82.112976
iter 60 value 80.916077
iter 70 value 80.696051
iter 80 value 80.325829
iter 90 value 80.166856
iter 100 value 79.952731
final value 79.952731
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.598347
iter 10 value 93.986063
iter 20 value 85.734943
iter 30 value 84.834427
iter 40 value 84.359167
iter 50 value 83.530007
iter 60 value 80.922053
iter 70 value 80.540603
iter 80 value 80.411181
iter 90 value 80.332095
iter 100 value 80.316540
final value 80.316540
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.057672
iter 10 value 94.003832
iter 20 value 93.964042
iter 30 value 93.963881
iter 40 value 93.913085
iter 50 value 93.912843
final value 93.912765
converged
Fitting Repeat 2
# weights: 103
initial value 98.339436
final value 94.054552
converged
Fitting Repeat 3
# weights: 103
initial value 117.605055
final value 94.054565
converged
Fitting Repeat 4
# weights: 103
initial value 94.853974
final value 93.993062
converged
Fitting Repeat 5
# weights: 103
initial value 98.242100
final value 94.054463
converged
Fitting Repeat 1
# weights: 305
initial value 110.414443
iter 10 value 94.058262
iter 20 value 94.047128
iter 30 value 93.842625
iter 40 value 90.890294
iter 50 value 90.829747
iter 60 value 90.817402
final value 90.816242
converged
Fitting Repeat 2
# weights: 305
initial value 95.575856
iter 10 value 94.038385
iter 20 value 94.035728
iter 30 value 94.033955
final value 94.033953
converged
Fitting Repeat 3
# weights: 305
initial value 111.774543
iter 10 value 94.038155
iter 20 value 88.729987
iter 30 value 87.022456
iter 40 value 84.605304
iter 50 value 84.596406
final value 84.596400
converged
Fitting Repeat 4
# weights: 305
initial value 95.253867
iter 10 value 94.038143
iter 20 value 94.033092
iter 30 value 93.593875
iter 40 value 93.204255
final value 93.204016
converged
Fitting Repeat 5
# weights: 305
initial value 119.380344
iter 10 value 94.058175
iter 20 value 94.053208
iter 30 value 86.473543
iter 40 value 86.394532
iter 50 value 86.393292
iter 60 value 86.341071
final value 86.341068
converged
Fitting Repeat 1
# weights: 507
initial value 110.101429
iter 10 value 94.042536
iter 20 value 94.034073
iter 30 value 86.136436
iter 40 value 85.536304
final value 85.535513
converged
Fitting Repeat 2
# weights: 507
initial value 94.489513
iter 10 value 88.126940
iter 20 value 85.544042
iter 30 value 85.160215
iter 40 value 85.123075
iter 50 value 84.661093
iter 60 value 84.173631
iter 70 value 84.098394
iter 80 value 84.097719
iter 90 value 84.094821
iter 100 value 84.069964
final value 84.069964
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 115.645518
iter 10 value 93.908103
iter 20 value 91.111445
iter 30 value 87.693698
iter 40 value 85.255534
iter 50 value 84.785225
iter 60 value 84.719088
iter 70 value 84.708052
iter 80 value 84.704065
final value 84.704042
converged
Fitting Repeat 4
# weights: 507
initial value 94.934209
iter 10 value 94.060674
iter 20 value 94.004201
iter 30 value 92.395973
iter 40 value 89.416262
iter 50 value 85.117033
iter 60 value 84.491417
iter 70 value 83.697504
iter 80 value 82.987153
iter 90 value 82.892873
iter 100 value 79.649981
final value 79.649981
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 118.330325
iter 10 value 89.131988
iter 20 value 85.680298
iter 30 value 85.508900
iter 40 value 85.502146
iter 50 value 85.495431
iter 60 value 85.139209
final value 85.136657
converged
Fitting Repeat 1
# weights: 103
initial value 105.461413
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 108.596406
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 99.185103
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.052593
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 102.754445
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 95.831041
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 95.693682
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 110.894830
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 95.578709
iter 10 value 92.000909
iter 20 value 91.893361
iter 30 value 91.893280
iter 30 value 91.893279
iter 30 value 91.893279
final value 91.893279
converged
Fitting Repeat 5
# weights: 305
initial value 104.000039
iter 10 value 94.312038
iter 10 value 94.312038
iter 10 value 94.312038
final value 94.312038
converged
Fitting Repeat 1
# weights: 507
initial value 96.847490
iter 10 value 92.015970
iter 20 value 89.427882
iter 30 value 88.455378
iter 40 value 88.443663
final value 88.443641
converged
Fitting Repeat 2
# weights: 507
initial value 94.857420
final value 94.466823
converged
Fitting Repeat 3
# weights: 507
initial value 110.554711
final value 94.466823
converged
Fitting Repeat 4
# weights: 507
initial value 112.469103
iter 10 value 94.147256
final value 94.145584
converged
Fitting Repeat 5
# weights: 507
initial value 120.824103
final value 94.466823
converged
Fitting Repeat 1
# weights: 103
initial value 103.879303
iter 10 value 94.259539
iter 20 value 92.760721
iter 30 value 88.187640
iter 40 value 87.965896
iter 50 value 87.570957
iter 60 value 86.301384
iter 70 value 85.888457
iter 80 value 85.811125
final value 85.809966
converged
Fitting Repeat 2
# weights: 103
initial value 105.260790
iter 10 value 94.488258
iter 20 value 93.726549
iter 30 value 89.357484
iter 40 value 88.876190
iter 50 value 88.593574
iter 60 value 88.587327
final value 88.586097
converged
Fitting Repeat 3
# weights: 103
initial value 96.646456
iter 10 value 94.476752
iter 20 value 93.813760
iter 30 value 89.347276
iter 40 value 88.935106
iter 50 value 88.807187
iter 60 value 88.601630
final value 88.586097
converged
Fitting Repeat 4
# weights: 103
initial value 102.271146
iter 10 value 94.487486
iter 20 value 94.217798
iter 30 value 94.128356
iter 40 value 94.044078
iter 50 value 91.772033
iter 60 value 90.173786
iter 70 value 89.536991
iter 80 value 88.754124
iter 90 value 88.586968
final value 88.586097
converged
Fitting Repeat 5
# weights: 103
initial value 103.516912
iter 10 value 91.445983
iter 20 value 89.232782
iter 30 value 89.150946
iter 40 value 88.705037
iter 50 value 88.547652
final value 88.541845
converged
Fitting Repeat 1
# weights: 305
initial value 119.052654
iter 10 value 94.260476
iter 20 value 90.586662
iter 30 value 88.938550
iter 40 value 87.053589
iter 50 value 86.430663
iter 60 value 86.220323
iter 70 value 86.062300
iter 80 value 85.925326
iter 90 value 85.756621
iter 100 value 85.621511
final value 85.621511
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.200872
iter 10 value 94.352778
iter 20 value 88.259727
iter 30 value 87.381786
iter 40 value 86.529899
iter 50 value 85.323434
iter 60 value 84.826549
iter 70 value 84.770971
iter 80 value 84.764980
iter 90 value 84.756608
iter 100 value 84.742766
final value 84.742766
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.672303
iter 10 value 94.597171
iter 20 value 94.204372
iter 30 value 90.933757
iter 40 value 88.139786
iter 50 value 86.518450
iter 60 value 86.111639
iter 70 value 86.053084
iter 80 value 85.978610
iter 90 value 85.832008
iter 100 value 85.755847
final value 85.755847
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 114.745573
iter 10 value 93.803622
iter 20 value 93.133039
iter 30 value 89.507595
iter 40 value 89.015274
iter 50 value 88.760331
iter 60 value 88.309297
iter 70 value 85.950433
iter 80 value 85.708366
iter 90 value 85.211503
iter 100 value 85.091924
final value 85.091924
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 120.969045
iter 10 value 94.635753
iter 20 value 94.397230
iter 30 value 89.763732
iter 40 value 87.801554
iter 50 value 87.083251
iter 60 value 86.019352
iter 70 value 85.817343
iter 80 value 85.636768
iter 90 value 85.286486
iter 100 value 85.057626
final value 85.057626
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.155602
iter 10 value 94.805165
iter 20 value 94.184519
iter 30 value 89.883099
iter 40 value 89.337954
iter 50 value 88.676082
iter 60 value 85.882437
iter 70 value 85.135933
iter 80 value 84.967992
iter 90 value 84.820396
iter 100 value 84.634657
final value 84.634657
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.529530
iter 10 value 95.325706
iter 20 value 94.785308
iter 30 value 92.642567
iter 40 value 90.795603
iter 50 value 89.234706
iter 60 value 87.044432
iter 70 value 86.153767
iter 80 value 85.633888
iter 90 value 84.959943
iter 100 value 84.547505
final value 84.547505
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 108.557987
iter 10 value 95.172431
iter 20 value 94.363624
iter 30 value 91.532377
iter 40 value 89.742213
iter 50 value 89.023639
iter 60 value 86.742925
iter 70 value 85.173008
iter 80 value 85.003031
iter 90 value 84.849256
iter 100 value 84.536694
final value 84.536694
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.877244
iter 10 value 97.223675
iter 20 value 91.189425
iter 30 value 88.552062
iter 40 value 86.023642
iter 50 value 85.813737
iter 60 value 85.429010
iter 70 value 85.222517
iter 80 value 84.917383
iter 90 value 84.887708
iter 100 value 84.878081
final value 84.878081
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 118.894769
iter 10 value 94.499125
iter 20 value 94.441305
iter 30 value 90.032023
iter 40 value 89.066983
iter 50 value 88.194381
iter 60 value 87.487275
iter 70 value 86.505609
iter 80 value 86.453479
iter 90 value 86.421066
iter 100 value 86.348631
final value 86.348631
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.031325
final value 94.485923
converged
Fitting Repeat 2
# weights: 103
initial value 101.693679
iter 10 value 94.486013
iter 20 value 94.484225
iter 30 value 94.157646
final value 94.112854
converged
Fitting Repeat 3
# weights: 103
initial value 104.721175
final value 94.485956
converged
Fitting Repeat 4
# weights: 103
initial value 108.593678
final value 94.485844
converged
Fitting Repeat 5
# weights: 103
initial value 98.274795
final value 94.485771
converged
Fitting Repeat 1
# weights: 305
initial value 104.403733
iter 10 value 94.488829
iter 20 value 94.477917
iter 30 value 93.888294
iter 40 value 89.047714
iter 50 value 88.272498
iter 60 value 86.391108
iter 70 value 86.306753
iter 80 value 86.305447
iter 90 value 86.302837
iter 100 value 86.301973
final value 86.301973
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 98.918638
iter 10 value 94.317535
iter 20 value 94.313311
iter 30 value 94.312479
iter 40 value 94.303929
iter 50 value 94.289415
final value 94.289382
converged
Fitting Repeat 3
# weights: 305
initial value 110.700276
iter 10 value 94.488811
iter 20 value 94.468779
iter 30 value 93.302740
iter 40 value 86.924256
iter 50 value 85.484375
iter 60 value 85.271699
iter 70 value 85.265661
iter 80 value 85.265233
iter 80 value 85.265233
iter 80 value 85.265233
final value 85.265233
converged
Fitting Repeat 4
# weights: 305
initial value 98.880702
iter 10 value 94.471723
iter 20 value 93.225324
iter 30 value 93.216673
iter 40 value 93.205002
iter 50 value 93.203205
iter 60 value 93.201547
final value 93.201478
converged
Fitting Repeat 5
# weights: 305
initial value 116.687414
iter 10 value 94.471493
iter 20 value 94.053366
iter 30 value 89.221267
iter 40 value 88.559345
iter 50 value 88.445535
iter 60 value 87.219672
iter 70 value 85.451160
iter 80 value 85.246562
iter 90 value 84.905046
iter 100 value 84.623951
final value 84.623951
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 97.853682
iter 10 value 94.461464
iter 20 value 94.320144
iter 30 value 94.179810
iter 40 value 92.848113
iter 50 value 92.609979
iter 60 value 92.606389
iter 70 value 90.808142
iter 80 value 90.777142
iter 90 value 90.771967
iter 100 value 90.755700
final value 90.755700
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 97.337767
iter 10 value 89.453726
iter 20 value 87.602610
iter 30 value 87.502259
final value 87.501958
converged
Fitting Repeat 3
# weights: 507
initial value 98.730632
iter 10 value 94.488752
iter 20 value 92.576148
iter 30 value 89.345845
iter 40 value 89.223954
iter 50 value 89.209718
iter 60 value 88.603027
iter 70 value 85.847443
iter 80 value 85.517823
iter 90 value 85.497758
iter 100 value 85.484001
final value 85.484001
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 96.208624
iter 10 value 94.475482
iter 20 value 94.340114
iter 30 value 94.300620
iter 40 value 94.097100
iter 50 value 94.076206
iter 60 value 94.070363
iter 70 value 94.054685
final value 94.054585
converged
Fitting Repeat 5
# weights: 507
initial value 116.676299
iter 10 value 94.476037
iter 20 value 94.333260
iter 30 value 92.576321
iter 40 value 89.472229
iter 50 value 87.606684
iter 60 value 86.167948
iter 70 value 85.251492
iter 80 value 84.689959
iter 90 value 84.473534
iter 100 value 84.215480
final value 84.215480
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 135.378197
iter 10 value 117.809369
iter 20 value 113.397455
iter 30 value 109.673209
iter 40 value 108.821133
iter 50 value 108.530953
iter 60 value 105.859777
iter 70 value 104.486534
iter 80 value 103.048232
iter 90 value 101.663201
iter 100 value 101.374138
final value 101.374138
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 140.147514
iter 10 value 117.914791
iter 20 value 116.604792
iter 30 value 112.396371
iter 40 value 110.175405
iter 50 value 106.142796
iter 60 value 105.358677
iter 70 value 104.753431
iter 80 value 103.337003
iter 90 value 102.278780
iter 100 value 101.317909
final value 101.317909
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 156.515406
iter 10 value 117.383356
iter 20 value 106.279592
iter 30 value 104.793780
iter 40 value 104.115954
iter 50 value 103.588207
iter 60 value 103.090249
iter 70 value 102.680217
iter 80 value 102.558113
iter 90 value 102.079008
iter 100 value 101.397457
final value 101.397457
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 130.011097
iter 10 value 114.411801
iter 20 value 106.463184
iter 30 value 105.900442
iter 40 value 103.809510
iter 50 value 103.206731
iter 60 value 102.358734
iter 70 value 102.077611
iter 80 value 101.993389
iter 90 value 101.960257
iter 100 value 101.830182
final value 101.830182
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 142.256383
iter 10 value 117.309463
iter 20 value 108.773385
iter 30 value 105.785509
iter 40 value 105.135192
iter 50 value 104.920498
iter 60 value 104.275289
iter 70 value 102.059518
iter 80 value 101.575139
iter 90 value 101.308490
iter 100 value 101.145154
final value 101.145154
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Wed Oct 18 01:10:57 2023
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
45.545 1.186 75.636
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 39.735 | 0.996 | 58.749 | |
| FreqInteractors | 0.276 | 0.017 | 0.439 | |
| calculateAAC | 0.046 | 0.007 | 0.089 | |
| calculateAutocor | 0.389 | 0.042 | 0.633 | |
| calculateCTDC | 0.097 | 0.004 | 0.155 | |
| calculateCTDD | 0.785 | 0.047 | 1.277 | |
| calculateCTDT | 0.267 | 0.011 | 0.422 | |
| calculateCTriad | 0.388 | 0.015 | 0.616 | |
| calculateDC | 0.102 | 0.011 | 0.174 | |
| calculateF | 0.385 | 0.012 | 0.602 | |
| calculateKSAAP | 0.106 | 0.009 | 0.174 | |
| calculateQD_Sm | 1.966 | 0.059 | 3.027 | |
| calculateTC | 1.911 | 0.145 | 3.113 | |
| calculateTC_Sm | 0.280 | 0.011 | 0.433 | |
| corr_plot | 40.789 | 1.029 | 61.326 | |
| enrichfindP | 0.515 | 0.081 | 16.839 | |
| enrichfind_hp | 0.076 | 0.012 | 1.303 | |
| enrichplot | 0.293 | 0.007 | 0.432 | |
| filter_missing_values | 0.001 | 0.000 | 0.002 | |
| getFASTA | 0.086 | 0.013 | 4.150 | |
| getHPI | 0.000 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.001 | 0.005 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.002 | 0.000 | 0.003 | |
| plotPPI | 0.071 | 0.005 | 0.123 | |
| pred_ensembel | 15.196 | 0.275 | 20.017 | |
| var_imp | 42.582 | 0.969 | 63.304 | |