| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:37:58 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 188/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiocSklearn 1.22.0 (landing page) Vince Carey
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | ERROR | skipped | skipped | ||||||||
|
To the developers/maintainers of the BiocSklearn package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiocSklearn |
| Version: 1.22.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocSklearn |
| StartedAt: 2023-10-15 22:02:19 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 22:05:32 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 192.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocSklearn
###
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* checking for file ‘BiocSklearn/DESCRIPTION’ ... OK
* preparing ‘BiocSklearn’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiocSklearn.Rmd’ using rmarkdown
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/BiocSklearn/1.22.0/bsklenv
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h3422bc3_4
ca-certificates conda-forge/osx-arm64::ca-certificates-2023.7.22-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.43.2-h091b4b1_0
libzlib conda-forge/osx-arm64::libzlib-1.2.13-h53f4e23_5
ncurses conda-forge/osx-arm64::ncurses-6.4-h7ea286d_0
openssl conda-forge/osx-arm64::openssl-3.1.3-h53f4e23_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/osx-arm64::python-3.8.13-hd3575e6_0_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/osx-arm64::sqlite-3.43.2-hf2abe2d_0
tk conda-forge/osx-arm64::tk-8.6.13-hb31c410_0
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/BiocSklearn/1.22.0/bsklenv
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-hca03da5_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-h53f4e23_0 --> pkgs/main::openssl-3.0.11-h1a28f6b_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
- scipy=1.4.1
Current channels:
- https://conda.anaconda.org/conda-forge/osx-arm64
- https://conda.anaconda.org/conda-forge/noarch
- https://repo.anaconda.com/pkgs/main/osx-arm64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/osx-arm64
- https://repo.anaconda.com/pkgs/r/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
Quitting from lines 116-118 [dopc1] (BiocSklearn.Rmd)
Error: processing vignette 'BiocSklearn.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘BiocSklearn.Rmd’
SUMMARY: processing the following file failed:
‘BiocSklearn.Rmd’
Error: Vignette re-building failed.
Execution halted