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This page was generated on 2023-10-16 11:37:32 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1917/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Weil Lai
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
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To the developers/maintainers of the sigPathway package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sigPathway.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: sigPathway |
| Version: 1.68.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL sigPathway |
| StartedAt: 2023-10-15 15:06:50 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 15:07:13 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 23.3 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL sigPathway
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’
* installing *source* package ‘sigPathway’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c calc_gene_set_internal.c -o calc_gene_set_internal.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c calc_gene_set_stat.c -o calc_gene_set_stat.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c calc_probe_stat.c -o calc_probe_stat.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c calc_weights.c -o calc_weights.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c matrix_fn.c -o matrix_fn.o
matrix_fn.c:29:41: error: too few arguments to function call, expected 15, have 13
x, &nrx, y, &nry, &zero, z, &nrx);
^
/Library/Frameworks/R.framework/Resources/include/R_ext/BLAS.h:207:1: note: 'dgemm_' declared here
F77_NAME(dgemm)(const char *transa, const char *transb, const int *m,
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x) F77_CALL(x)
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x) x ## _
^
<scratch space>:98:1: note: expanded from here
dgemm_
^
matrix_fn.c:68:41: error: too few arguments to function call, expected 24, have 21
&tmp, &lwork, &itmp, &liwork, &info);
^
/Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:1274:1: note: 'dsyevr_' declared here
F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo,
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x) F77_CALL(x)
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x) x ## _
^
<scratch space>:290:1: note: expanded from here
dsyevr_
^
matrix_fn.c:80:41: error: too few arguments to function call, expected 24, have 21
work, &lwork, iwork, &liwork, &info);
^
/Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:1274:1: note: 'dsyevr_' declared here
F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo,
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x) F77_CALL(x)
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x) x ## _
^
<scratch space>:290:1: note: expanded from here
dsyevr_
^
3 errors generated.
make: *** [matrix_fn.o] Error 1
ERROR: compilation failed for package ‘sigPathway’
* removing ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/sigPathway’