| Back to Multiple platform build/check report for BioC 3.17: simplified long | 
  | 
This page was generated on 2023-10-16 11:35:35 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 | 
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 | 
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1401/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| nullranges 1.6.2  (landing page) Michael Love 
  | nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
| 
To the developers/maintainers of the nullranges package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.  | 
| Package: nullranges | 
| Version: 1.6.2 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings nullranges_1.6.2.tar.gz | 
| StartedAt: 2023-10-15 23:22:58 -0400 (Sun, 15 Oct 2023) | 
| EndedAt: 2023-10-15 23:30:56 -0400 (Sun, 15 Oct 2023) | 
| EllapsedTime: 477.8 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: nullranges.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings nullranges_1.6.2.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/nullranges.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘nullranges/DESCRIPTION’ ... OK
* this is package ‘nullranges’ version ‘1.6.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nullranges’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘bootRanges.Rmd’ using ‘UTF-8’... OK
  ‘matchRanges.Rmd’ using ‘UTF-8’... OK
  ‘matching_ginteractions.Rmd’ using ‘UTF-8’... OK
  ‘matching_granges.Rmd’ using ‘UTF-8’... OK
  ‘matching_pool_set.Rmd’ using ‘UTF-8’... OK
  ‘nullranges.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
nullranges.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL nullranges ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘nullranges’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nullranges)
nullranges.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(nullranges)
> 
> test_check("nullranges")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
> 
> proc.time()
   user  system elapsed 
 16.091   0.835  16.841 
nullranges.Rcheck/nullranges-Ex.timings
| name | user | system | elapsed | |
| MatchedDataFrame | 2.075 | 0.092 | 2.017 | |
| MatchedGInteractions | 0.645 | 0.000 | 0.524 | |
| MatchedGRanges | 1.485 | 0.012 | 1.400 | |
| bootRanges | 0.290 | 0.008 | 0.297 | |
| combnCov | 0.004 | 0.000 | 0.004 | |
| covariates | 0.155 | 0.019 | 0.145 | |
| focal | 0.158 | 0.005 | 0.115 | |
| indices | 0.171 | 0.008 | 0.134 | |
| makeExampleMatchedDataSet | 0.673 | 0.004 | 0.548 | |
| matchRanges | 2.486 | 0.108 | 2.163 | |
| matched | 0.148 | 0.004 | 0.126 | |
| matchedClass | 0.137 | 0.012 | 0.125 | |
| matchedData | 0.152 | 0.000 | 0.118 | |
| method | 0.136 | 0.000 | 0.112 | |
| oneRegionSegment | 0.323 | 0.003 | 0.482 | |
| overview | 0.163 | 0.000 | 0.133 | |
| plotCovariate | 3.901 | 0.387 | 4.225 | |
| plotPropensity | 1.617 | 0.052 | 1.588 | |
| plotSegment | 1.527 | 0.148 | 1.676 | |
| pool | 0.165 | 0.016 | 0.139 | |
| reduceSegment | 0.237 | 0.004 | 0.241 | |
| segmentDensity | 0.540 | 0.068 | 0.608 | |
| unmatched | 0.143 | 0.000 | 0.113 | |
| withReplacement | 0.135 | 0.008 | 0.120 | |