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This page was generated on 2023-10-16 11:37:12 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1138/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mbOmic 1.4.0  (landing page)
Congcong Gong
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/mbOmic
git_branch: RELEASE_3_17
git_last_commit: 351c345
git_last_commit_date: 2023-04-25 11:38:19 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for mbOmic on merida1


To the developers/maintainers of the mbOmic package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mbOmic.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: mbOmic
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mbOmic
StartedAt: 2023-10-15 19:16:36 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 19:18:13 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 97.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mbOmic
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* checking for file ‘mbOmic/DESCRIPTION’ ... OK
* preparing ‘mbOmic’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Integrative_analysis_of_metabolome_and_microbiome.Rmd’ using rmarkdown
--- finished re-building ‘Integrative_analysis_of_metabolome_and_microbiome.Rmd’

--- re-building ‘enterotyping.Rmd’ using rmarkdown

Quitting from lines 29-34 [unnamed-chunk-2] (enterotyping.Rmd)
Error: processing vignette 'enterotyping.Rmd' failed with diagnostics:
cannot open the connection to 'http://enterotypes.org/ref_samples_abundance_MetaHIT.txt'
--- failed re-building ‘enterotyping.Rmd’

SUMMARY: processing the following file failed:
  ‘enterotyping.Rmd’

Error: Vignette re-building failed.
Execution halted