Britta Velten
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_17 |
| git_last_commit: 503e2c9 |
| git_last_commit_date: 2023-05-01 20:10:30 -0400 (Mon, 01 May 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:35:25 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 875/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.16.1 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.16.1 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings graper_1.16.1.tar.gz |
| StartedAt: 2023-10-15 21:48:57 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 21:50:19 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 82.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings graper_1.16.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/graper.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.16.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘example_linear.Rmd’ using ‘UTF-8’... OK
‘example_logistic.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.17-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c fit_graper.cpp -o fit_graper.o
In file included from /home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/lexical_cast.hpp:30,
from /home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/math/tools/convert_from_string.hpp:15,
from /home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/math/constants/constants.hpp:14,
from /home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/math/special_functions/digamma.hpp:20,
from graper_linear_dense_ff.h:2,
from fit_graper.cpp:4:
/home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
/home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
/home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
/home/biocbuild/bbs-3.17-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.17-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-879.452
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-572.973
ELB improved by 306.479
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-512.217
ELB improved by 60.7557
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-476.407
ELB improved by 35.8098
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.924
ELB improved by 15.4838
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.349
ELB improved by 6.57469
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.885
ELB improved by 3.46404
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.401
ELB improved by 2.4843
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.308
ELB improved by 2.09242
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.431
ELB improved by 1.8775
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.703
ELB improved by 1.72728
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.103
ELB improved by 1.60049
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.623
ELB improved by 1.48013
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.265
ELB improved by 1.35736
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.038
ELB improved by 1.22705
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.951
ELB improved by 1.08774
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.009
ELB improved by 0.941563
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.216
ELB improved by 0.793504
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.565
ELB improved by 0.650659
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.044
ELB improved by 0.521223
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.632
ELB improved by 0.411984
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.306
ELB improved by 0.325718
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.045
ELB improved by 0.260887
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.832
ELB improved by 0.213431
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.653
ELB improved by 0.178809
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.5
ELB improved by 0.153177
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.366
ELB improved by 0.13372
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.247
ELB improved by 0.118531
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.141
ELB improved by 0.106366
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.045
ELB improved by 0.0964179
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.956
ELB improved by 0.0881539
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.875
ELB improved by 0.081213
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.8
ELB improved by 0.0753411
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.73
ELB improved by 0.0703541
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.663
ELB improved by 0.0661144
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.601
ELB improved by 0.0625172
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.541
ELB improved by 0.0594809
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.484
ELB improved by 0.0569419
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.43
ELB improved by 0.0548503
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.376
ELB improved by 0.0531672
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.325
ELB improved by 0.0518632
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.274
ELB improved by 0.0509167
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.223
ELB improved by 0.0503135
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.173
ELB improved by 0.050046
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.123
ELB improved by 0.0501131
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.073
ELB improved by 0.0505204
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.021
ELB improved by 0.0512801
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.969
ELB improved by 0.052412
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.915
ELB improved by 0.053944
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.859
ELB improved by 0.0559136
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.801
ELB improved by 0.0583692
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.739
ELB improved by 0.0613724
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.674
ELB improved by 0.0650008
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.605
ELB improved by 0.0693508
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.531
ELB improved by 0.0745421
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.45
ELB improved by 0.0807228
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.362
ELB improved by 0.0880751
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.265
ELB improved by 0.0968222
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.158
ELB improved by 0.107237
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.038
ELB improved by 0.119648
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.904
ELB improved by 0.134453
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.751
ELB improved by 0.15212
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.578
ELB improved by 0.173191
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.38
ELB improved by 0.198274
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.152
ELB improved by 0.228016
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.889
ELB improved by 0.263031
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.585
ELB improved by 0.303778
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.235
ELB improved by 0.350334
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.833
ELB improved by 0.402074
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.376
ELB improved by 0.457229
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.863
ELB improved by 0.512415
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.301
ELB improved by 0.562277
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.701
ELB improved by 0.599581
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.085
ELB improved by 0.616475
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.477
ELB improved by 0.607529
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.904
ELB improved by 0.573304
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.383
ELB improved by 0.521044
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.921
ELB improved by 0.46154
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.516
ELB improved by 0.405269
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.156
ELB improved by 0.360442
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.823
ELB improved by 0.332574
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.499
ELB improved by 0.323719
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.169
ELB improved by 0.3299
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.831
ELB improved by 0.33888
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.495
ELB improved by 0.335097
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.188
ELB improved by 0.307686
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.934
ELB improved by 0.254251
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.745
ELB improved by 0.188758
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.612
ELB improved by 0.133013
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.516
ELB improved by 0.0958405
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.442
ELB improved by 0.0740117
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.379
ELB improved by 0.0624736
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.321
ELB improved by 0.0582601
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.261
ELB improved by 0.0605057
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.191
ELB improved by 0.0699191
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.102
ELB improved by 0.0884765
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.983
ELB improved by 0.119763
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.812
ELB improved by 0.170997
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.562
ELB improved by 0.249167
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.246
ELB improved by 0.315859
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.974
ELB improved by 0.272195
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.814
ELB improved by 0.160214
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.727
ELB improved by 0.0866015
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.677
ELB improved by 0.0507138
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.643
ELB improved by 0.0334491
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.619
ELB improved by 0.0245739
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.599
ELB improved by 0.0194162
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.583
ELB improved by 0.0160307
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.57
ELB improved by 0.0136013
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.558
ELB improved by 0.0117551
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.548
ELB improved by 0.0103008
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.538
ELB improved by 0.00912833
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-892.779
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-582.74
ELB improved by 310.039
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-525.172
ELB improved by 57.5681
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-487.346
ELB improved by 37.8261
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.682
ELB improved by 18.6635
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.442
ELB improved by 8.24079
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.065
ELB improved by 5.37611
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.051
ELB improved by 5.01423
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.786
ELB improved by 5.26533
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.255
ELB improved by 5.53098
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.909
ELB improved by 5.34622
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.43
ELB improved by 4.47913
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.183
ELB improved by 3.24613
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.004
ELB improved by 2.17962
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.51
ELB improved by 1.49351
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.411
ELB improved by 1.09956
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.554
ELB improved by 0.856424
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.869
ELB improved by 0.685022
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.31
ELB improved by 0.559048
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.842
ELB improved by 0.467891
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.44
ELB improved by 0.402618
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.084
ELB improved by 0.356025
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.76
ELB improved by 0.323292
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.459
ELB improved by 0.301542
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.17
ELB improved by 0.289196
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.884
ELB improved by 0.28543
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.595
ELB improved by 0.289628
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.294
ELB improved by 0.300818
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.976
ELB improved by 0.317335
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.639
ELB improved by 0.337227
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.28
ELB improved by 0.359165
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.897
ELB improved by 0.382741
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.49
ELB improved by 0.407769
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.056
ELB improved by 0.433681
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.596
ELB improved by 0.459699
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.111
ELB improved by 0.485401
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.6
ELB improved by 0.511141
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.061
ELB improved by 0.538108
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.494
ELB improved by 0.567982
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.891
ELB improved by 0.602279
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.25
ELB improved by 0.641494
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.565
ELB improved by 0.68438
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.837
ELB improved by 0.727931
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.069
ELB improved by 0.76834
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.266
ELB improved by 0.802684
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.435
ELB improved by 0.831554
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.57
ELB improved by 0.865208
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.629
ELB improved by 0.940643
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.473
ELB improved by 1.15589
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.906
ELB improved by 1.56688
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.283
ELB improved by 1.62315
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.119
ELB improved by 1.1637
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.333
ELB improved by 0.786804
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.73
ELB improved by 0.602343
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.177
ELB improved by 0.552952
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.58
ELB improved by 0.59747
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.874
ELB improved by 0.705656
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.104
ELB improved by 0.770551
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.332
ELB improved by 0.771391
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.583
ELB improved by 0.749192
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.986
ELB improved by 0.596545
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.615
ELB improved by 0.371341
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.4
ELB improved by 0.215517
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.26
ELB improved by 0.139187
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.155
ELB improved by 0.105286
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.063
ELB improved by 0.0925416
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.97
ELB improved by 0.0923382
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.871
ELB improved by 0.0996039
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.764
ELB improved by 0.107142
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.657
ELB improved by 0.10625
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.562
ELB improved by 0.0951842
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.481
ELB improved by 0.0814323
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.408
ELB improved by 0.0722865
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.339
ELB improved by 0.0693278
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.269
ELB improved by 0.0697503
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.201
ELB improved by 0.0686414
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.138
ELB improved by 0.0622703
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.087
ELB improved by 0.0515801
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.046
ELB improved by 0.0409938
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.012
ELB improved by 0.0340737
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.979
ELB improved by 0.0322638
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.943
ELB improved by 0.0367927
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.892
ELB improved by 0.0511323
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.809
ELB improved by 0.0828834
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.67
ELB improved by 0.138912
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.471
ELB improved by 0.198353
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.263
ELB improved by 0.20871
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.089
ELB improved by 0.173743
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.948
ELB improved by 0.140919
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.826
ELB improved by 0.121865
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.722
ELB improved by 0.103931
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.644
ELB improved by 0.0785688
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.592
ELB improved by 0.051697
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.56
ELB improved by 0.0319565
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.539
ELB improved by 0.0205805
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.525
ELB improved by 0.0146943
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.513
ELB improved by 0.0116433
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.503
ELB improved by 0.00991447
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-880.572
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-571.983
ELB improved by 308.589
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-514.534
ELB improved by 57.4491
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-478.746
ELB improved by 35.7878
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.728
ELB improved by 17.0177
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.559
ELB improved by 7.16936
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.062
ELB improved by 3.497
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.877
ELB improved by 2.1852
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.25
ELB improved by 1.62684
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.903
ELB improved by 1.34721
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.729
ELB improved by 1.17315
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.687
ELB improved by 1.04286
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.75
ELB improved by 0.936241
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.903
ELB improved by 0.846982
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.13
ELB improved by 0.772901
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.418
ELB improved by 0.712831
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.752
ELB improved by 0.665597
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.122
ELB improved by 0.629597
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.52
ELB improved by 0.602562
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.938
ELB improved by 0.581402
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.376
ELB improved by 0.562301
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.835
ELB improved by 0.541295
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.319
ELB improved by 0.515368
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.836
ELB improved by 0.483556
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.389
ELB improved by 0.447245
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.979
ELB improved by 0.409427
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.606
ELB improved by 0.373381
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.264
ELB improved by 0.341542
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.949
ELB improved by 0.31508
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.655
ELB improved by 0.294218
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.376
ELB improved by 0.278889
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.107
ELB improved by 0.269132
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.842
ELB improved by 0.265019
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.576
ELB improved by 0.266343
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.303
ELB improved by 0.27243
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.021
ELB improved by 0.282149
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.727
ELB improved by 0.293996
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.421
ELB improved by 0.306211
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.104
ELB improved by 0.316944
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.779
ELB improved by 0.324534
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.452
ELB improved by 0.327852
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.125
ELB improved by 0.326566
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.804
ELB improved by 0.321201
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.491
ELB improved by 0.31295
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.187
ELB improved by 0.303342
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.894
ELB improved by 0.293921
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.607
ELB improved by 0.28605
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.327
ELB improved by 0.28089
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.047
ELB improved by 0.279517
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.764
ELB improved by 0.283169
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.47
ELB improved by 0.293602
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.157
ELB improved by 0.313446
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.811
ELB improved by 0.345936
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.419
ELB improved by 0.392133
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.974
ELB improved by 0.444706
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.486
ELB improved by 0.487608
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.976
ELB improved by 0.510959
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.458
ELB improved by 0.517476
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.947
ELB improved by 0.511239
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.453
ELB improved by 0.49388
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.984
ELB improved by 0.46917
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.538
ELB improved by 0.445656
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.106
ELB improved by 0.431915
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.687
ELB improved by 0.418968
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.312
ELB improved by 0.375022
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.012
ELB improved by 0.300676
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.776
ELB improved by 0.235276
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.582
ELB improved by 0.193966
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.413
ELB improved by 0.1692
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.262
ELB improved by 0.151014
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.129
ELB improved by 0.132886
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.016
ELB improved by 0.11339
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.921
ELB improved by 0.0950998
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.84
ELB improved by 0.0811147
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.766
ELB improved by 0.0731726
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.694
ELB improved by 0.0724238
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.613
ELB improved by 0.0811491
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.509
ELB improved by 0.103875
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.365
ELB improved by 0.143609
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.181
ELB improved by 0.183899
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.997
ELB improved by 0.184722
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.849
ELB improved by 0.147731
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.734
ELB improved by 0.115067
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.632
ELB improved by 0.101766
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.527
ELB improved by 0.105436
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.403
ELB improved by 0.123648
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.253
ELB improved by 0.15056
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.084
ELB improved by 0.168364
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.928
ELB improved by 0.155784
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.812
ELB improved by 0.116077
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.739
ELB improved by 0.0731275
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.697
ELB improved by 0.0421839
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.673
ELB improved by 0.024133
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.658
ELB improved by 0.0146757
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.648
ELB improved by 0.00994139
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-876.43
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-569.158
ELB improved by 307.272
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-508.527
ELB improved by 60.6313
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.23
ELB improved by 37.2972
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.955
ELB improved by 14.2749
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.574
ELB improved by 5.38035
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.802
ELB improved by 2.7722
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.968
ELB improved by 1.83405
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.495
ELB improved by 1.47293
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.173
ELB improved by 1.32267
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.91
ELB improved by 1.26293
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.661
ELB improved by 1.24879
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.4
ELB improved by 1.26064
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.112
ELB improved by 1.288
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.79
ELB improved by 1.32192
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.44
ELB improved by 1.35057
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.082
ELB improved by 1.3573
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.759
ELB improved by 1.32341
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.522
ELB improved by 1.23714
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.418
ELB improved by 1.10425
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.468
ELB improved by 0.949389
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.665
ELB improved by 0.803488
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.977
ELB improved by 0.687869
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.369
ELB improved by 0.608239
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.809
ELB improved by 0.559268
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.278
ELB improved by 0.531763
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.76
ELB improved by 0.517181
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.251
ELB improved by 0.509232
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.747
ELB improved by 0.503984
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.248
ELB improved by 0.499499
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.752
ELB improved by 0.495398
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.26
ELB improved by 0.492486
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.767
ELB improved by 0.492466
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.27
ELB improved by 0.497742
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.758
ELB improved by 0.511128
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.224
ELB improved by 0.534979
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.654
ELB improved by 0.569301
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.044
ELB improved by 0.610618
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.387
ELB improved by 0.656565
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.672
ELB improved by 0.715203
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.862
ELB improved by 0.809947
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.879
ELB improved by 0.982389
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.6
ELB improved by 1.27903
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.952
ELB improved by 1.64889
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.975
ELB improved by 1.97682
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.694
ELB improved by 2.28051
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.418
ELB improved by 2.27659
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.617
ELB improved by 1.80015
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.326
ELB improved by 1.29161
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.438
ELB improved by 0.887753
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.845
ELB improved by 0.592663
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.445
ELB improved by 0.400511
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.16
ELB improved by 0.285339
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.941
ELB improved by 0.218595
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.761
ELB improved by 0.180516
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.6
ELB improved by 0.160084
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.449
ELB improved by 0.151608
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.297
ELB improved by 0.15137
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.143
ELB improved by 0.154516
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.989
ELB improved by 0.153676
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.846
ELB improved by 0.142867
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.723
ELB improved by 0.123051
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.624
ELB improved by 0.0992983
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.548
ELB improved by 0.0755887
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.493
ELB improved by 0.0550581
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.454
ELB improved by 0.0396375
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.425
ELB improved by 0.0291581
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.402
ELB improved by 0.0223237
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.384
ELB improved by 0.01785
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.37
ELB improved by 0.014836
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.357
ELB improved by 0.0127243
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.346
ELB improved by 0.011184
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.336
ELB improved by 0.010018
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.327
ELB improved by 0.00910702
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.266 0.148 2.402
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.056 | 0.014 | 0.071 | |
| getPIPs | 0.057 | 0.011 | 0.067 | |
| graper | 0.073 | 0.032 | 0.104 | |
| makeExampleData | 0.011 | 0.000 | 0.011 | |
| makeExampleDataWithUnequalGroups | 0.009 | 0.003 | 0.013 | |
| plotELBO | 0.231 | 0.024 | 0.254 | |
| plotGroupPenalties | 0.781 | 0.056 | 0.838 | |
| plotPosterior | 0.478 | 0.039 | 0.518 | |
| predict.graper | 2.064 | 0.076 | 2.140 | |
| print.graper | 0.051 | 0.011 | 0.063 | |