Simone Tiberi
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/distinct |
| git_branch: RELEASE_3_17 |
| git_last_commit: 3f26450 |
| git_last_commit_date: 2023-05-15 05:46:56 -0400 (Mon, 15 May 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:36:59 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 566/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| distinct 1.12.2 (landing page) Simone Tiberi
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the distinct package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/distinct.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: distinct |
| Version: 1.12.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL distinct |
| StartedAt: 2023-10-15 16:18:19 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 16:22:34 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 255.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL distinct
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’
* installing *source* package ‘distinct’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Perm.cpp -o Perm.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Perm_covariates.cpp -o Perm_covariates.o
In file included from Perm_covariates.cpp:2:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast.h:5:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast/matrix.hpp:15:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast/types.hpp:42:7: warning: inline variables are a C++17 extension [-Wc++17-extensions]
inline static type val;
^
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast/types.hpp:47:7: warning: inline variables are a C++17 extension [-Wc++17-extensions]
inline static type val= NA_INTEGER;
^
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast/types.hpp:52:7: warning: inline variables are a C++17 extension [-Wc++17-extensions]
inline static type val= NA_LOGICAL;
^
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast/types.hpp:57:7: warning: inline variables are a C++17 extension [-Wc++17-extensions]
inline static type val= NA_REAL;
^
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast/types.hpp:62:7: warning: inline variables are a C++17 extension [-Wc++17-extensions]
inline static type val = NA_STRING;
^
5 warnings generated.
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Perm_covariates_parallel.cpp -o Perm_covariates_parallel.o
In file included from Perm_covariates_parallel.cpp:2:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast.h:5:
In file included from /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast/matrix.hpp:15:
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast/types.hpp:42:7: warning: inline variables are a C++17 extension [-Wc++17-extensions]
inline static type val;
^
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast/types.hpp:47:7: warning: inline variables are a C++17 extension [-Wc++17-extensions]
inline static type val= NA_INTEGER;
^
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast/types.hpp:52:7: warning: inline variables are a C++17 extension [-Wc++17-extensions]
inline static type val= NA_LOGICAL;
^
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast/types.hpp:57:7: warning: inline variables are a C++17 extension [-Wc++17-extensions]
inline static type val= NA_REAL;
^
/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include/Rfast/types.hpp:62:7: warning: inline variables are a C++17 extension [-Wc++17-extensions]
inline static type val = NA_STRING;
^
5 warnings generated.
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Perm_parallel.cpp -o Perm_parallel.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rfast/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o distinct.so Perm.o Perm_covariates.o Perm_covariates_parallel.o Perm_parallel.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/00LOCK-distinct/00new/distinct/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (distinct)