| Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-10-16 11:37:26 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1693/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ReUseData 1.0.1 (landing page) Qian Liu
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | ... NOT SUPPORTED ... | ||||||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
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To the developers/maintainers of the ReUseData package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReUseData.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ReUseData |
| Version: 1.0.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReUseData |
| StartedAt: 2023-10-15 20:39:10 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 20:40:10 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 60.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReUseData
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* checking for file ‘ReUseData/DESCRIPTION’ ... OK
* preparing ‘ReUseData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ReUseData_data.Rmd’ using rmarkdown
Quitting from lines 92-98 [unnamed-chunk-2] (ReUseData_data.Rmd)
Error: processing vignette 'ReUseData_data.Rmd' failed with diagnostics:
NA/NaN argument
--- failed re-building ‘ReUseData_data.Rmd’
--- re-building ‘ReUseData_quickStart.Rmd’ using rmarkdown
Traceback (most recent call last):
File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/bin/cwltool", line 6, in <module>
from cwltool.main import run
File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/main.py", line 47, in <module>
from . import CWL_CONTENT_TYPES, workflow
File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/workflow.py", line 22, in <module>
from . import command_line_tool, context, procgenerator
File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/command_line_tool.py", line 42, in <module>
from .builder import (
File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/builder.py", line 17, in <module>
from cwl_utils import expression
ModuleNotFoundError: No module named 'cwl_utils'
Quitting from lines 79-88 [unnamed-chunk-4] (ReUseData_quickStart.Rmd)
Error: processing vignette 'ReUseData_quickStart.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building ‘ReUseData_quickStart.Rmd’
--- re-building ‘ReUseData_recipe.Rmd’ using rmarkdown
Traceback (most recent call last):
File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/bin/cwltool", line 6, in <module>
from cwltool.main import run
File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/main.py", line 47, in <module>
from . import CWL_CONTENT_TYPES, workflow
File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/workflow.py", line 22, in <module>
from . import command_line_tool, context, procgenerator
File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/command_line_tool.py", line 42, in <module>
from .builder import (
File "/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/Rcwl/1.16.0/env_Rcwl/lib/python3.8/site-packages/cwltool/builder.py", line 17, in <module>
from cwl_utils import expression
ModuleNotFoundError: No module named 'cwl_utils'
Quitting from lines 166-172 [unnamed-chunk-4] (ReUseData_recipe.Rmd)
Error: processing vignette 'ReUseData_recipe.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building ‘ReUseData_recipe.Rmd’
SUMMARY: processing the following files failed:
‘ReUseData_data.Rmd’ ‘ReUseData_quickStart.Rmd’
‘ReUseData_recipe.Rmd’
Error: Vignette re-building failed.
Execution halted