| Back to Multiple platform build/check report for BioC 3.17: simplified long | 
  | 
This page was generated on 2023-10-16 11:36:15 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 | 
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 | 
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1030/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| IsoCorrectoRGUI 1.16.0  (landing page) Christian Kohler 
  | nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
| 
To the developers/maintainers of the IsoCorrectoRGUI package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IsoCorrectoRGUI.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.  | 
| Package: IsoCorrectoRGUI | 
| Version: 1.16.0 | 
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:IsoCorrectoRGUI.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings IsoCorrectoRGUI_1.16.0.tar.gz | 
| StartedAt: 2023-10-16 03:22:46 -0400 (Mon, 16 Oct 2023) | 
| EndedAt: 2023-10-16 03:23:31 -0400 (Mon, 16 Oct 2023) | 
| EllapsedTime: 44.8 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: IsoCorrectoRGUI.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:IsoCorrectoRGUI.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings IsoCorrectoRGUI_1.16.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc/meat/IsoCorrectoRGUI.Rcheck'
* using R version 4.3.1 (2023-06-16 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'IsoCorrectoRGUI/DESCRIPTION' ... OK
* this is package 'IsoCorrectoRGUI' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IsoCorrectoRGUI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
IsoCorrectoRGUI.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL IsoCorrectoRGUI ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'IsoCorrectoRGUI' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IsoCorrectoRGUI)
IsoCorrectoRGUI.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(IsoCorrectoRGUI)
IsoCorrectoRGUI v1.16.0
For help, type browseVignettes('IsoCorrectoRGUI') to view the IsoCorrectoRGUI documentation or ?IsoCorrectionGUI
to view the documentation of the IsoCorrectionGUI() function.
IsoCorrectoRGUI is licensed under GPL-3. It is free software and comes without any warranty.
If you use IsoCorrectoRGUI in published research, please cite:
Paul Heinrich, Christian Kohler et al.
Correction for natural isotope abundance and tracer impurity in MS-, MS/MS- and high-resolution multiple-tracer-data from stable isotope labeling experiments using IsoCorrectoR (Scientific reports, 2018)
> 
> test_check("IsoCorrectoRGUI")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
> 
> proc.time()
   user  system elapsed 
   1.12    0.43    1.59 
IsoCorrectoRGUI.Rcheck/IsoCorrectoRGUI-Ex.timings
| name | user | system | elapsed | |
| GetGUIstatus | 0 | 0 | 0 | |
| IsoCorrectionGUI | 0.05 | 0.00 | 0.08 | |