Yuzhou Chang
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/IRISFGM |
| git_branch: RELEASE_3_17 |
| git_last_commit: 337ae88 |
| git_last_commit_date: 2023-04-25 11:26:52 -0400 (Tue, 25 Apr 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:36:15 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1020/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| IRISFGM 1.8.0 (landing page) Yuzhou Chang
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the IRISFGM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IRISFGM.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: IRISFGM |
| Version: 1.8.0 |
| Command: rm -rf IRISFGM.buildbin-libdir && mkdir IRISFGM.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=IRISFGM.buildbin-libdir IRISFGM_1.8.0.tar.gz |
| StartedAt: 2023-10-16 08:58:38 -0400 (Mon, 16 Oct 2023) |
| EndedAt: 2023-10-16 09:00:21 -0400 (Mon, 16 Oct 2023) |
| EllapsedTime: 102.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: IRISFGM_1.8.0.zip |
| PackageFileSize: 2.235 MiB |
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### Running command:
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### rm -rf IRISFGM.buildbin-libdir && mkdir IRISFGM.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=IRISFGM.buildbin-libdir IRISFGM_1.8.0.tar.gz
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* installing *source* package 'IRISFGM' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -DVER=2.08 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -DVER=2.08 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cluster.cpp -o cluster.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -DVER=2.08 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c expand.cpp -o expand.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -DVER=2.08 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c get_options.cpp -o get_options.o
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c getline.c -o getline.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -DVER=2.08 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c main.cpp -o main.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -DVER=2.08 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c make_graph.cpp -o make_graph.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -DVER=2.08 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rcpp_irisfgm.cpp -o rcpp_irisfgm.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -DVER=2.08 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c read_array.cpp -o read_array.o
read_array.cpp: In function 'void discretize_new(const char*)':
read_array.cpp:882:26: warning: format '%d' expects argument of type 'int', but argument 4 has type '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} [-Wformat=]
882 | fprintf(F2, "%s_%d", genes_n[id], eflags[id][i]);
| ~^
| |
| int
| %lld
read_array.cpp:883:35: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
883 | for (std::size_t j = 0; j < cols; j++) {
| ~~^~~~~~
read_array.cpp: In function 'void discretize_rpkm(const char*)':
read_array.cpp:1376:26: warning: format '%d' expects argument of type 'int', but argument 4 has type '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} [-Wformat=]
1376 | fprintf(F2, "%s_%d", genes_n[id], eflags[id][i]);
| ~^
| |
| int
| %lld
read_array.cpp:1377:35: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
1377 | for (std::size_t j = 0; j < cols; j++) {
| ~~^~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -DVER=2.08 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c struct.cpp -o struct.o
struct.cpp: In function 'void uglyTime(const char*, ...)':
struct.cpp:75:15: warning: variable 'lastTime' set but not used [-Wunused-but-set-variable]
75 | static long lastTime = 0;
| ^~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -DVER=2.08 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c write_block.cpp -o write_block.o
g++ -shared -s -static-libgcc -o IRISFGM.dll tmp.def RcppExports.o cluster.o expand.o get_options.o getline.o main.o make_graph.o rcpp_irisfgm.o read_array.o struct.o write_block.o -fopenmp -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/meat/IRISFGM.buildbin-libdir/00LOCK-IRISFGM/00new/IRISFGM/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function from function 'ReadFrom10X_h5' in package 'IRISFGM'
Creating a generic function from function 'ReadFrom10X_folder' in package 'IRISFGM'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'IRISFGM' as IRISFGM_1.8.0.zip
* DONE (IRISFGM)