| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:36:05 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 563/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DirichletMultinomial 1.42.0 (landing page) Martin Morgan
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the DirichletMultinomial package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DirichletMultinomial.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DirichletMultinomial |
| Version: 1.42.0 |
| Command: rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.42.0.tar.gz |
| StartedAt: 2023-10-16 08:42:48 -0400 (Mon, 16 Oct 2023) |
| EndedAt: 2023-10-16 08:43:04 -0400 (Mon, 16 Oct 2023) |
| EllapsedTime: 15.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: DirichletMultinomial_1.42.0.zip |
| PackageFileSize: 801.1 KiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.42.0.tar.gz
###
##############################################################################
##############################################################################
* installing *source* package 'DirichletMultinomial' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dirichlet_fit.c -o dirichlet_fit.o
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dirichlet_fit_main.c -o dirichlet_fit_main.o
dirichlet_fit_main.c: In function 'hessian':
dirichlet_fit_main.c:391:34: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
391 | adCJK0[j] += adPi[i] * n ? gsl_sf_psi(adAlpha[j] + n) : dPsiAlpha;
| ~~~~~~~~^~~
dirichlet_fit_main.c:393:33: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
393 | adCJK[j] += adPi[i] * n ? gsl_sf_psi_1(adAlpha[j] + n): dPsi1Alpha;
| ~~~~~~~~^~~
dirichlet_fit_main.c: In function 'dirichlet_fit_main':
dirichlet_fit_main.c:542:17: warning: variable 'status' set but not used [-Wunused-but-set-variable]
542 | int signum, status;
| ^~~~~~
gcc -shared -s -static-libgcc -o DirichletMultinomial.dll tmp.def R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/x64/lib -lgsl -lgslcblas -lm -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/meat/DirichletMultinomial.buildbin-libdir/00LOCK-DirichletMultinomial/00new/DirichletMultinomial/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'DirichletMultinomial' as DirichletMultinomial_1.42.0.zip
* DONE (DirichletMultinomial)