| Back to Mac ARM64 build report for BioC 3.16 |
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This page was generated on 2023-04-19 11:01:56 -0400 (Wed, 19 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson | macOS 13.0 Ventura | arm64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4256 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the NetPathMiner package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1345/2183 | Hostname | OS / Arch | INSTALL | BUILD | BUILD BIN | ||||||||
| NetPathMiner 1.34.2 (landing page) Ahmed Mohamed
| kjohnson | macOS 13.0 Ventura / arm64 | ERROR | ERROR | skipped | ||||||||
| Package: NetPathMiner |
| Version: 1.34.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data NetPathMiner |
| StartedAt: 2023-04-17 18:47:35 -0400 (Mon, 17 Apr 2023) |
| EndedAt: 2023-04-17 18:47:50 -0400 (Mon, 17 Apr 2023) |
| EllapsedTime: 15.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data NetPathMiner
###
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* checking for file ‘NetPathMiner/DESCRIPTION’ ... OK
* preparing ‘NetPathMiner’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘NetPathMiner’ ...
** using staged installation
'config' variable 'CPP' is defunct
checking for gcc... clang -arch arm64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch arm64 accepts -g... yes
checking for clang -arch arm64 option to accept ISO C89... none needed
checking how to run the C preprocessor... clang -arch arm64 -E
checking for xmlParseFile in -lxml2... yes
checking for readSBML in -lsbml... no
untarring boost include tree...
SBML not found.
libXML2 found
checking for xml2-config... /usr/bin/xml2-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I . -I/opt/R/arm64/include -DHAVE_XML -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC -falign-functions=64 -Wall -g -O2 -c PathRanker.cpp -o PathRanker.o
In file included from PathRanker.cpp:23:
In file included from ./boost/graph/graph_utility.hpp:30:
In file included from ./boost/graph/properties.hpp:19:
In file included from ./boost/property_map/property_map.hpp:844:
In file included from ./boost/property_map/vector_property_map.hpp:14:
In file included from ./boost/shared_ptr.hpp:17:
In file included from ./boost/smart_ptr/shared_ptr.hpp:32:
In file included from ./boost/smart_ptr/detail/shared_count.hpp:29:
./boost/smart_ptr/detail/sp_counted_base.hpp:60:11: fatal error: 'boost/smart_ptr/detail/sp_counted_base_sync.hpp' file not found
# include <boost/smart_ptr/detail/sp_counted_base_sync.hpp>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 error generated.
make: *** [PathRanker.o] Error 1
ERROR: compilation failed for package ‘NetPathMiner’
* removing ‘/private/tmp/RtmpuPMkB4/Rinst67006f41b706/NetPathMiner’
-----------------------------------
ERROR: package installation failed