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This page was generated on 2022-07-11 11:06:57 -0400 (Mon, 11 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4168
kjohnsonmacOS 12.4 Montereyarm644.2.1 (2022-06-23) -- "Funny-Looking Kid" 3545
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INSTALL results for seqbias on kjohnson


To the developers/maintainers of the seqbias package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/seqbias.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1800/2130HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqbias 1.45.0  (landing page)
Daniel Jones
Snapshot Date: 2022-07-10 14:00:02 -0400 (Sun, 10 Jul 2022)
git_url: https://git.bioconductor.org/packages/seqbias
git_branch: master
git_last_commit: b471f9a
git_last_commit_date: 2022-04-26 11:06:44 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR    ERROR  skipped
lconwaymacOS 12.2.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnsonmacOS 12.4 Monterey / arm64  ERROR    NA    NA    NA  

Summary

Package: seqbias
Version: 1.45.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL seqbias
StartedAt: 2022-07-10 15:27:37 -0400 (Sun, 10 Jul 2022)
EndedAt: 2022-07-10 15:27:39 -0400 (Sun, 10 Jul 2022)
EllapsedTime: 2.3 seconds
RetCode: 1
Status:   ERROR  

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL seqbias
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’
* installing *source* package ‘seqbias’ ...
** using staged installation
** libs
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include  -Wall -Wextra -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c sam.c -o sam.o
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./sam.c:1:10: error: #include nested too deeply
#include <sam.c>
         ^
1 error generated.
make: *** [sam.o] Error 1
ERROR: compilation failed for package ‘seqbias’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/seqbias’