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This page was generated on 2022-07-11 11:06:38 -0400 (Mon, 11 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4168
kjohnsonmacOS 12.4 Montereyarm644.2.1 (2022-06-23) -- "Funny-Looking Kid" 3545
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for AnnotationHub on kjohnson


To the developers/maintainers of the AnnotationHub package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationHub.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 59/2130HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationHub 3.5.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-07-10 14:00:02 -0400 (Sun, 10 Jul 2022)
git_url: https://git.bioconductor.org/packages/AnnotationHub
git_branch: master
git_last_commit: 4082fc5
git_last_commit_date: 2022-04-26 11:14:15 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnsonmacOS 12.4 Monterey / arm64  OK    ERROR  skippedskipped

Summary

Package: AnnotationHub
Version: 3.5.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationHub
StartedAt: 2022-07-10 20:23:44 -0400 (Sun, 10 Jul 2022)
EndedAt: 2022-07-10 20:24:23 -0400 (Sun, 10 Jul 2022)
EllapsedTime: 39.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationHub
###
##############################################################################
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* checking for file ‘AnnotationHub/DESCRIPTION’ ... OK
* preparing ‘AnnotationHub’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘AnnotationHub-HOWTO.Rmd’ using rmarkdown
Quitting from lines 13-22 (AnnotationHub-HOWTO.Rmd) 
Error: processing vignette 'AnnotationHub-HOWTO.Rmd' failed with diagnostics:
there is no package called 'GenomicFeatures'
--- failed re-building ‘AnnotationHub-HOWTO.Rmd’

--- re-building ‘AnnotationHub.Rmd’ using rmarkdown
Quitting from lines 148-149 (AnnotationHub.Rmd) 
Error: processing vignette 'AnnotationHub.Rmd' failed with diagnostics:
failed to load resource
  name: AH15146
  title: dm1ToDm2.over.chain.gz
  reason: require("rtracklayer") failed: use BiocManager::install() to install package?
--- failed re-building ‘AnnotationHub.Rmd’

--- re-building ‘TroubleshootingTheCache.Rmd’ using rmarkdown
--- finished re-building ‘TroubleshootingTheCache.Rmd’

SUMMARY: processing the following files failed:
  ‘AnnotationHub-HOWTO.Rmd’ ‘AnnotationHub.Rmd’

Error: Vignette re-building failed.
Execution halted